Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314D01f
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    52   3e-08
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    38   7e-04
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    29   0.44 
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   1.3  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    27   1.8  
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    26   2.3  

>SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 206

 Score = 52.4 bits (120), Expect = 3e-08
 Identities = 26/75 (34%), Positives = 41/75 (54%)
 Frame = +1

Query: 187 FPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGKTHRAALKQLFALYLPVLEANW 366
           FP E  +  + K++LL++ +FAP   AF    +   EGK  R A  +L A++ P L+AN+
Sbjct: 94  FPIEKGAINVVKRVLLDQAVFAPFGTAFFFSWMTLAEGKGFRGAYDKLQAVFWPTLKANY 153

Query: 367 KWLTLFQVINLAFIP 411
                FQ +N   +P
Sbjct: 154 MVWPFFQTVNFWLMP 168


>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 37.9 bits (84), Expect = 7e-04
 Identities = 22/94 (23%), Positives = 42/94 (44%)
 Frame = +1

Query: 163 FYETVERLFPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGKTHRAALKQLFALY 342
           ++  +  +   E+    +  ++ L++ IFAPL   F    +   E K++          Y
Sbjct: 109 WFVALSNVIQTENPFIAIVLRVALDQFIFAPLGIVFFFLFMGITECKSYERLKSYFRKHY 168

Query: 343 LPVLEANWKWLTLFQVINLAFIPPMLRVCHEHCV 444
            P L+AN+      Q+ N  F+P +L+V   + V
Sbjct: 169 WPTLKANYILWPAVQLFNFTFVPLVLQVIFANAV 202


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 28.7 bits (61), Expect = 0.44
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = +1

Query: 187 FPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGKTHRAALKQLFALYLPVLEANW 366
           F + +++   +  ++L    F  + +   ++S  +F  KT    L  L  ++L    +NW
Sbjct: 135 FSKPTSAITCSNDVILSLSSFYLIQKDQRIFSDLQFSQKTVDYRLSLLRWIHLSSWPSNW 194

Query: 367 KWLTLF 384
           KWL  F
Sbjct: 195 KWLAYF 200


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 151 VPHYFYETVERLFPEESASF-PLAKKLLLERLIFAPLMQAFSLYSLARFEGK 303
           +P+     +++++   S SF P A K  +E  +   LM   S+Y    FEGK
Sbjct: 504 IPNELPMVLKQIYYSRSESFKPSAIKEFIEYFLCDQLMNCLSVYYSKYFEGK 555


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 272 ENACINGAKIKRSNNNFFASGNDADSS 192
           ENA  N      + NN+FA G +AD S
Sbjct: 719 ENASNNATDFSTAFNNYFADGPNADHS 745


>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 13  LSVPTYFFGCVVGTAGSLASQI 78
           +S+P    GC++G  GS  S+I
Sbjct: 325 ISIPADMVGCIIGRGGSKISEI 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,867,451
Number of Sequences: 5004
Number of extensions: 34630
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)