Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314D01f
         (452 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0180 - 1335825-1335980,1336584-1336670,1336767-1336859,133...    40   0.001
02_02_0131 - 7065762-7065813,7065907-7065992,7066080-7066150,706...    35   0.035
11_01_0180 - 1431758-1431838,1431975-1432061,1432180-1432230,143...    32   0.25 
01_03_0084 - 12286416-12286514,12286632-12286683,12286771-122868...    27   5.3  

>12_01_0180 -
           1335825-1335980,1336584-1336670,1336767-1336859,
           1336985-1337057,1337153-1337247,1337917-1338004,
           1338135-1338424
          Length = 293

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 26/85 (30%), Positives = 43/85 (50%)
 Frame = +1

Query: 157 HYFYETVERLFPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGKTHRAALKQLFA 336
           H +Y  + +L     AS  +A+ LLL++ IF+P+     +  L   EGK     + +L  
Sbjct: 156 HVWYLYLSKLVMINGASGAIAR-LLLDQFIFSPIFIGVFMSLLVTLEGKP-SLVVPKLKQ 213

Query: 337 LYLPVLEANWKWLTLFQVINLAFIP 411
            +L  + ANW+    FQ +N  F+P
Sbjct: 214 EWLSSVIANWQLWIPFQFLNFYFVP 238


>02_02_0131 -
           7065762-7065813,7065907-7065992,7066080-7066150,
           7066563-7066638,7066977-7067078,7068025-7068123,
           7068208-7068339
          Length = 205

 Score = 34.7 bits (76), Expect = 0.035
 Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 1/131 (0%)
 Frame = +1

Query: 37  GCVVGTAGSLASQIVAGESIRLDPIXXXXXXXXXXXXTVPHYFYETVERLFPEESASFPL 216
           GC+ G + S+A ++   + I    +               H+ ++ ++ +F  +  +  +
Sbjct: 49  GCLAGVSDSVAQKLSGYQRIEKRRLLLKMLFGFAYGGPFGHFLHKVLDYIFKGKKDTKTI 108

Query: 217 AKKLLLERLIFAPLMQ-AFSLYSLARFEGKTHRAALKQLFALYLPVLEANWKWLTLFQVI 393
           AKK+LLE++  +P     F  Y     E +  +    ++   Y  V  + W +  +   I
Sbjct: 109 AKKVLLEQITSSPWNNLLFLFYYGYVVERRPFKEVKTRVKKQYPSVQLSAWMFWPIVGWI 168

Query: 394 NLAFIPPMLRV 426
           N  ++P   RV
Sbjct: 169 NHMYMPLQFRV 179


>11_01_0180 -
           1431758-1431838,1431975-1432061,1432180-1432230,
           1432275-1432367,1432496-1432568,1432657-1432751,
           1433428-1433515,1433647-1433936
          Length = 285

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 16/106 (15%)
 Frame = +1

Query: 157 HYFYETVERLFPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGKTHRAA--LKQL 330
           H +Y  + +L     AS  +A+ LLL++ IF+P+     +  L   EGK       LKQ+
Sbjct: 156 HVWYLYLSKLVTINGASGAIAR-LLLDQFIFSPIFIGVFMSLLVTLEGKPSLVVPKLKQI 214

Query: 331 FAL--------------YLPVLEANWKWLTLFQVINLAFIPPMLRV 426
                            +L  + ANW+    FQ +N  F+P   +V
Sbjct: 215 LCSTADAVAVADMWVREWLSSVIANWQLWIPFQFLNFYFVPQKFQV 260


>01_03_0084 -
           12286416-12286514,12286632-12286683,12286771-12286871,
           12287498-12287650,12287703-12287762,12287872-12287998,
           12288581-12288708,12289196-12289291,12289473-12289526,
           12289603-12289689,12290954-12291057,12291163-12291246,
           12291374-12291422,12291523-12291886,12292186-12292226
          Length = 532

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 193 QETAFQLFHRNSEELYRQIIIRKNQMRE*DQV*LILQPRSVM 68
           Q    +L  +  E+LY QI++   ++RE D    IL+   VM
Sbjct: 67  QVAQLKLPRKKLEDLYEQIVLEMAELRELDTARAILRQTQVM 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,448,957
Number of Sequences: 37544
Number of extensions: 198723
Number of successful extensions: 436
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)