Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314D01f
         (452 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37448| Best HMM Match : Mpv17_PMP22 (HMM E-Value=3.6e-05)           65   2e-11
SB_37805| Best HMM Match : DoxA (HMM E-Value=1.7)                      32   0.19 
SB_48433| Best HMM Match : Ion_trans (HMM E-Value=6.1e-26)             29   2.4  
SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_52757| Best HMM Match : BolA (HMM E-Value=4.8)                      27   9.6  
SB_41439| Best HMM Match : SWIM (HMM E-Value=0.088)                    27   9.6  
SB_43823| Best HMM Match : MAM (HMM E-Value=0)                         27   9.6  

>SB_37448| Best HMM Match : Mpv17_PMP22 (HMM E-Value=3.6e-05)
          Length = 101

 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 33/91 (36%), Positives = 50/91 (54%)
 Frame = +1

Query: 157 HYFYETVERLFPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGKTHRAALKQLFA 336
           HYFY  +E   P     F  AKKL ++RLIF+P       Y +A FEGK+++ A+ ++ A
Sbjct: 10  HYFYNYLEHFVPR-GVPFSKAKKLFIDRLIFSPPFYLLFFYIVAIFEGKSNKEAIARIKA 68

Query: 337 LYLPVLEANWKWLTLFQVINLAFIPPMLRVC 429
            Y   L+ + K   L Q +N  +IP  + +C
Sbjct: 69  NYWGALKMSLKVWPLVQFVNFTYIPVQVIIC 99


>SB_37805| Best HMM Match : DoxA (HMM E-Value=1.7)
          Length = 788

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 6/40 (15%)
 Frame = +3

Query: 21  AYLFLWLRSGYS-WQSSITDRGWRI-----NQT*SYSRIW 122
           AY+ +W +SG+S +Q S   R WRI     NQ  +Y+R+W
Sbjct: 272 AYIRVWRKSGFSVYQGSACIRVWRIPGFSVNQGLAYTRVW 311


>SB_48433| Best HMM Match : Ion_trans (HMM E-Value=6.1e-26)
          Length = 1344

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 337 LYLPVLEANWKWLTLFQVINLAFIPPML 420
           L+  V +A W WL LF VI  A + P +
Sbjct: 394 LHYSVFKAFWDWLILFLVIYTAIVTPYM 421


>SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 448

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 334 QKVASERLYEFFLQIEPKNIEKMLALTVQRSNVPIITFLQV 212
           Q +A    Y  FLQ E + +EKM+ L  ++ +VPI   ++V
Sbjct: 277 QHIAKRGHYGAFLQDEWELLEKMVKLAHEKLSVPITCKIRV 317


>SB_52757| Best HMM Match : BolA (HMM E-Value=4.8)
          Length = 127

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = +2

Query: 131 DYYLAVQFLTISMK----QLKGCFLKNLHHSH 214
           D Y A+  +T+ +K    Q KGC LKN +  H
Sbjct: 73  DEYEAINSITVRVKTKKKQTKGCALKNYYRCH 104


>SB_41439| Best HMM Match : SWIM (HMM E-Value=0.088)
          Length = 921

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = +2

Query: 131 DYYLAVQFLTISMK----QLKGCFLKNLHHSH 214
           D Y A+  +T+ +K    Q KGC LKN +  H
Sbjct: 163 DEYEAINSITVRVKTKKKQTKGCALKNYYRCH 194


>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
          Length = 1724

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 177 NCFIEIVRNCTAK**SVKTKCEN 109
           +CFI++ RNCTA     + +C+N
Sbjct: 111 DCFIDVARNCTAN----EVRCKN 129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,544,133
Number of Sequences: 59808
Number of extensions: 240793
Number of successful extensions: 525
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)