Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314D01f
         (452 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    26   0.22 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   1.6  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.3  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   8.3  

>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 25.8 bits (54), Expect = 0.22
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +1

Query: 175 VERLFPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGKTHRAALKQLFAL-YLPV 351
           +E  FPEE+    L   L L R+    L  + ++  L + + K     +  L +   LPV
Sbjct: 35  LENFFPEENVVEELLSPLTLNRITHI-LANSPAIIILGQ-DSKAKAIVVNTLISNDILPV 92

Query: 352 LEANWKWLTL 381
               W+W+ L
Sbjct: 93  CNGLWRWIRL 102


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 296 SNRAKEYRENACINGAKIKRSNNNFFASGNDADSSGN 186
           SN +     NA  N +    +NNN   + N A+ +GN
Sbjct: 223 SNNSTITAGNANTNASNNNNNNNNNNNNNNGANDNGN 259


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 68  HHRSWLENQSDLILFSHLV 124
           HHR WL+    L+   HL+
Sbjct: 2   HHRMWLQQIFILLQMIHLI 20


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -1

Query: 269 NACINGAKIKRSNNNFFASGNDADSSG 189
           N C N    + S ++   + N ++SSG
Sbjct: 19  NTCSNSQSQRSSGSSISRNSNRSESSG 45


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -1

Query: 269 NACINGAKIKRSNNNFFASGNDADSSG 189
           N C N    + S ++   + N ++SSG
Sbjct: 19  NTCSNSQSQRSSGSSISRNSNRSESSG 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,733
Number of Sequences: 438
Number of extensions: 2310
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)