Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314C12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.0  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    25   6.8  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    25   9.0  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    25   9.0  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   9.0  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    25   9.0  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    25   9.0  

>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 410 DDEYFNKKTHRYTIVNDIGEKIFESKN 490
           DD YF ++   + ++NDI  +I  + N
Sbjct: 502 DDSYFPREIQMFGLINDINYQILSNMN 528


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 125 LTKRTSQY*FNFTELSHNNSLCTTVNIENNVLKQKVRVEVK 3
           L +  ++Y F  T+   +  +   +NIE  VLK+K   +VK
Sbjct: 278 LRQGQTRYPFLVTQFVRDEDMEVDLNIEETVLKEKYADKVK 318


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 84  FREIKLILRRSFCELVQ*IVLKFFRSIFGFY 176
           +++I +I   S C LVQ ++L  F   FG++
Sbjct: 258 YQQIPMIEFYSNCVLVQSLILSLFLISFGYF 288


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 84  FREIKLILRRSFCELVQ*IVLKFFRSIFGFY 176
           +++I +I   S C LVQ ++L  F   FG++
Sbjct: 258 YQQIPMIEFYSNCVLVQSLILSLFLISFGYF 288


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 407  HDDEYFNKKTHRYTIVNDIGEKIFESKNKAKNI 505
            ++  Y + + HR  +VND+   I ES N+A  I
Sbjct: 1404 YNKAYGHIERHRDILVNDLSSIIGESYNRAYGI 1436


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 84  FREIKLILRRSFCELVQ*IVLKFFRSIFGFY 176
           +++I +I   S C LVQ ++L  F   FG++
Sbjct: 258 YQQIPMIEFYSNCVLVQSLILSLFLISFGYF 288


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 84  FREIKLILRRSFCELVQ*IVLKFFRSIFGFY 176
           +++I +I   S C LVQ ++L  F   FG++
Sbjct: 258 YQQIPMIEFYSNCVLVQSLILSLFLISFGYF 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,778,396
Number of Sequences: 5004
Number of extensions: 30239
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)