Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314C12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0726 + 23904350-23904964,23905986-23906021,23906158-239062...    31   0.42 
08_02_0909 - 22515326-22515418,22515992-22516150,22516583-225166...    29   2.3  
01_01_0661 - 5036592-5037428,5037529-5037957,5038067-5038261,503...    28   4.0  
03_06_0532 - 34562151-34562225,34562958-34563161                       27   9.1  
03_02_0154 + 5967512-5967658,5968206-5968652,5968766-5968846,596...    27   9.1  
03_01_0235 - 1842909-1843498,1844380-1844569                           27   9.1  

>06_03_0726 +
           23904350-23904964,23905986-23906021,23906158-23906256,
           23906445-23906627,23907016-23907105,23907187-23907285,
           23907584-23907688,23907786-23907926,23908009-23908296,
           23908536-23908826
          Length = 648

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -1

Query: 233 STFFWPDDTFFGYSVISI*VKTKNAAKKLQNYLLHKLTKRTSQY*FNFTE-LSHNNSLCT 57
           STF + +D    +   S  + TK++   LQN   HK  K+ +   F+  + + HN ++C 
Sbjct: 212 STFVFKNDMDISHRYGSRGINTKSSNNSLQNSSFHKTAKQYNCDMFHVMQTIVHNVAVCA 271

Query: 56  TV 51
           TV
Sbjct: 272 TV 273


>08_02_0909 -
           22515326-22515418,22515992-22516150,22516583-22516658,
           22517980-22518141,22518826-22519259,22519723-22521414
          Length = 871

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -1

Query: 77  HNNSLCTTVNIENNVLKQ 24
           H+NSL T V IE N+LKQ
Sbjct: 850 HSNSLVTIVGIEGNILKQ 867


>01_01_0661 -
           5036592-5037428,5037529-5037957,5038067-5038261,
           5038919-5038942,5039436-5039780
          Length = 609

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 395 ITSWHDDEYFNK-KTHRYTIVNDIGEKIFESKNKAKNIR 508
           I SW+D  +  K +   Y +V+ +GE++FE  +KA  +R
Sbjct: 489 IVSWNDHFFVLKVEGDCYHVVDTLGERLFEGCDKAYMLR 527


>03_06_0532 - 34562151-34562225,34562958-34563161
          Length = 92

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +2

Query: 377 FNKKYGITSWHDDEYFNKKTHRYTIVNDIGEKIF 478
           + K      W  DE+  K TH++  ++D+  + F
Sbjct: 18  YTKVLACHRWIQDEFLRKATHKWAFLSDMSPRKF 51


>03_02_0154 +
           5967512-5967658,5968206-5968652,5968766-5968846,
           5969058-5969075,5969552-5969748,5969844-5969943,
           5970676-5970861
          Length = 391

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 197 IRKMYHPARKKLIDFYLSIVLIVSVTRTEARS 292
           I   YH AR++  +FY + +L ++ T  E+ S
Sbjct: 162 ISSQYHKARQEFAEFYKNALLYLAYTTVESLS 193


>03_01_0235 - 1842909-1843498,1844380-1844569
          Length = 259

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +2

Query: 209 YHPARKKLIDFYLSIVLI 262
           +HP  ++L+DFYLS V++
Sbjct: 23  FHPTEEELLDFYLSRVVL 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,647,523
Number of Sequences: 37544
Number of extensions: 141865
Number of successful extensions: 317
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)