Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314C12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81109-12|CAE17917.2|  364|Caenorhabditis elegans Hypothetical p...    28   4.7  
AF016444-13|AAB65926.1|  330|Caenorhabditis elegans Serpentine r...    28   4.7  
Z68114-5|CAA92155.1|  316|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U80029-16|AAB37595.2|  330|Caenorhabditis elegans Serpentine rec...    27   6.2  
Z81484-3|CAB03971.1|  346|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF040653-8|AAB95031.1|  532|Caenorhabditis elegans F-box b prote...    27   8.1  

>Z81109-12|CAE17917.2|  364|Caenorhabditis elegans Hypothetical
           protein R10D12.17 protein.
          Length = 364

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 490 IFTFEYFFANVINNSVSVCFFIEIFVIV 407
           +F F YFF+ + ++  +VCFF  I  IV
Sbjct: 1   MFEFSYFFSFLSDHEYTVCFFSFIINIV 28


>AF016444-13|AAB65926.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 8 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 508 SNILCFIFTFEYFFANVINNSVSVCFFIEIFVIVPR 401
           S I CFIF  +Y F   + ++ +V F IE ++   R
Sbjct: 98  STIRCFIFRTQYVFGIRLVSATTVPFIIERYIATVR 133


>Z68114-5|CAA92155.1|  316|Caenorhabditis elegans Hypothetical
           protein F17A2.7 protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -2

Query: 520 SIVISNILCFIFTFEYFFANVINNSVSVCFFIEIFVIVP 404
           ++VISN+L F+  +  + A  IN   +  + +  F++ P
Sbjct: 97  AVVISNVLIFLTIYLKYLATKINTRKTCNYGVTFFILSP 135


>U80029-16|AAB37595.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 21 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 508 SNILCFIFTFEYFFANVINNSVSVCFFIEIFVIVPR 401
           S I CF+F  +Y F   + ++ +V F IE ++   R
Sbjct: 98  STIRCFVFRSQYLFGIRLVSATTVPFVIERYIATVR 133


>Z81484-3|CAB03971.1|  346|Caenorhabditis elegans Hypothetical
           protein C47A10.6 protein.
          Length = 346

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 508 SNILCFIFTFEYFFANVINNSVSVCFFIE 422
           S++ CFI  F Y F  +++++ ++   IE
Sbjct: 100 SSLRCFILRFPYMFGLILSSTTTIFLMIE 128


>AF040653-8|AAB95031.1|  532|Caenorhabditis elegans F-box b protein
           protein 50 protein.
          Length = 532

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 7/24 (29%), Positives = 18/24 (75%)
 Frame = -2

Query: 157 RKNFRTIYCTSSQKERLNINLISR 86
           +KN + ++C  S+ E++ I+++S+
Sbjct: 319 KKNLKKVFCNMSENEQVRISMVSK 342


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,754,410
Number of Sequences: 27780
Number of extensions: 170293
Number of successful extensions: 442
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)