Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314C11f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51126| Best HMM Match : MSG (HMM E-Value=6.4)                       28   5.4  
SB_56700| Best HMM Match : rve (HMM E-Value=1.1e-11)                   27   7.1  

>SB_51126| Best HMM Match : MSG (HMM E-Value=6.4)
          Length = 194

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 364 FTLSDNGGVAYGDSKDRTSSRV-SWKFIPLWENNKVYFKIENTERKQNL 507
           FTL D+    YG+ K+   S+V S   + L  +NKVY     T  ++ L
Sbjct: 101 FTLRDDRNKFYGNRKEIAGSKVSSISSLALESDNKVYISESLTPSRKKL 149


>SB_56700| Best HMM Match : rve (HMM E-Value=1.1e-11)
          Length = 1140

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 52  SLYADEGTAFNEILAEHLYNDVIIADYDSAVERSKLIYTDNK 177
           SL  D G  +   L+E L   + +A  D  +   K +Y D K
Sbjct: 455 SLLTDHGVLYPRALSEALLFKITLATVDQGLATKKFVYPDIK 496


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,572,494
Number of Sequences: 59808
Number of extensions: 278869
Number of successful extensions: 794
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)