Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314C11f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D84294-1|BAA12301.1| 2025|Homo sapiens TPRDI protein. 30 5.7
D83327-1|BAA23666.1| 1941|Homo sapiens DCRR1 protein. 30 5.7
D83077-1|BAA11769.1| 2025|Homo sapiens TPRD protein. 30 5.7
BC092466-1|AAH92466.1| 780|Homo sapiens TTC3 protein protein. 30 5.7
BC065377-1|AAH65377.1| 254|Homo sapiens FOXH1 protein protein. 30 5.7
BC063033-1|AAH63033.1| 782|Homo sapiens TTC3 protein protein. 30 5.7
U05589-1|AAA77669.1| 406|Homo sapiens protein ( Human ribosomal... 29 7.5
AJ001866-1|CAA05057.1| 496|Homo sapiens TPR Repeat Protein D pr... 29 7.5
>D84294-1|BAA12301.1| 2025|Homo sapiens TPRDI protein.
Length = 2025
Score = 29.9 bits (64), Expect = 5.7
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Frame = +1
Query: 193 NVVNNLIRNNKMNCMEYAYQLWMQGSEDIVRDCFPVE---FTLIL---AENYVKLMYRRD 354
N++ L + M+C+E + M+G+E+ ++ F + +T + ENY L+Y
Sbjct: 214 NLLEELKTQSCMDCIEEGELMKMKGNEEFSKERFDIAIIYYTRAIEYRPENY--LLYGNR 271
Query: 355 GLAFTLSDNGGVAYGDSKDRTSSRVSW 435
L F + A GD K T + +W
Sbjct: 272 ALCFLRTGQFRNALGDGKRATILKNTW 298
>D83327-1|BAA23666.1| 1941|Homo sapiens DCRR1 protein.
Length = 1941
Score = 29.9 bits (64), Expect = 5.7
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Frame = +1
Query: 193 NVVNNLIRNNKMNCMEYAYQLWMQGSEDIVRDCFPVE---FTLIL---AENYVKLMYRRD 354
N++ L + M+C+E + M+G+E+ ++ F + +T + ENY L+Y
Sbjct: 130 NLLEELKTQSCMDCIEEGELMKMKGNEEFSKERFDIAIIYYTRAIEYRPENY--LLYGNR 187
Query: 355 GLAFTLSDNGGVAYGDSKDRTSSRVSW 435
L F + A GD K T + +W
Sbjct: 188 ALCFLRTGQFRNALGDGKRATILKNTW 214
>D83077-1|BAA11769.1| 2025|Homo sapiens TPRD protein.
Length = 2025
Score = 29.9 bits (64), Expect = 5.7
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Frame = +1
Query: 193 NVVNNLIRNNKMNCMEYAYQLWMQGSEDIVRDCFPVE---FTLIL---AENYVKLMYRRD 354
N++ L + M+C+E + M+G+E+ ++ F + +T + ENY L+Y
Sbjct: 214 NLLEELKTQSCMDCIEEGELMKMKGNEEFSKERFDIAIIYYTRAIEYRPENY--LLYGNR 271
Query: 355 GLAFTLSDNGGVAYGDSKDRTSSRVSW 435
L F + A GD K T + +W
Sbjct: 272 ALCFLRTGQFRNALGDGKRATILKNTW 298
>BC092466-1|AAH92466.1| 780|Homo sapiens TTC3 protein protein.
Length = 780
Score = 29.9 bits (64), Expect = 5.7
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Frame = +1
Query: 193 NVVNNLIRNNKMNCMEYAYQLWMQGSEDIVRDCFPVE---FTLIL---AENYVKLMYRRD 354
N++ L + M+C+E + M+G+E+ ++ F + +T + ENY L+Y
Sbjct: 214 NLLEELKTQSCMDCIEEGELMKMKGNEEFSKERFDIAIIYYTRAIEYRPENY--LLYGNR 271
Query: 355 GLAFTLSDNGGVAYGDSKDRTSSRVSW 435
L F + A GD K T + +W
Sbjct: 272 ALCFLRTGQFRNALGDGKRATILKNTW 298
>BC065377-1|AAH65377.1| 254|Homo sapiens FOXH1 protein protein.
Length = 254
Score = 29.9 bits (64), Expect = 5.7
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = -2
Query: 298 PGNNPGRCPRSLASRAGRRTPCSSS 224
P PG CPR L SR G PCS S
Sbjct: 13 PSTRPGPCPRCLPSRMG---PCSGS 34
>BC063033-1|AAH63033.1| 782|Homo sapiens TTC3 protein protein.
Length = 782
Score = 29.9 bits (64), Expect = 5.7
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Frame = +1
Query: 193 NVVNNLIRNNKMNCMEYAYQLWMQGSEDIVRDCFPVE---FTLIL---AENYVKLMYRRD 354
N++ L + M+C+E + M+G+E+ ++ F + +T + ENY L+Y
Sbjct: 214 NLLEELKTQSCMDCIEEGELMKMKGNEEFSKERFDIAIIYYTRAIEYRPENY--LLYGNR 271
Query: 355 GLAFTLSDNGGVAYGDSKDRTSSRVSW 435
L F + A GD K T + +W
Sbjct: 272 ALCFLRTGQFRNALGDGKRATILKNTW 298
>U05589-1|AAA77669.1| 406|Homo sapiens protein ( Human ribosomal
protein S1 homolog mRNA, partial cds. ).
Length = 406
Score = 29.5 bits (63), Expect = 7.5
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 373 SDNGGVAYGDSKDRTSSRVSWKFIPLWENNKVYFKIENTER 495
SD GVAY SK R +R +W+ + E + V K+ N R
Sbjct: 93 SDKEGVAYLLSKKRLDARKAWENLSFAEGDTVDAKVINAVR 133
>AJ001866-1|CAA05057.1| 496|Homo sapiens TPR Repeat Protein D
protein.
Length = 496
Score = 29.5 bits (63), Expect = 7.5
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Frame = +1
Query: 193 NVVNNLIRNNKMNCMEYAYQLWMQGSEDIVRDCFPVE---FTLIL---AENYVKLMYRRD 354
N++ L + M+C+E + M+G+E+ ++ F + +T + ENY L+Y
Sbjct: 94 NLLEELKTQSCMDCIEEGGLMKMKGNEEFSKERFDIAIIYYTRAIEYRPENY--LLYGNR 151
Query: 355 GLAFTLSDNGGVAYGDSKDRTSSRVSW 435
L F + A GD K T + +W
Sbjct: 152 ALCFPRTGQFRNALGDGKRATILKNTW 178
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,647,943
Number of Sequences: 237096
Number of extensions: 1303553
Number of successful extensions: 3149
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3144
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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