Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314C09f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 33 0.034
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 1.7
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 27 1.7
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss... 27 2.2
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 26 3.9
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 25 6.8
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 25 9.0
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 25 9.0
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 9.0
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 32.7 bits (71), Expect = 0.034
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = +2
Query: 260 RSPCCNSICCSYSCTLRCTFCCSNRCGTSCCPSSGILCCFAILCWCCSNPAS 415
+ CC+S S C+ CCS TSCC CC + CCSN S
Sbjct: 244 KKSCCSSKKPS-CCSQEKKGCCSTE-KTSCCSQEKKSCCTSEKPSCCSNGKS 293
Score = 28.3 bits (60), Expect = 0.73
Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Frame = +2
Query: 263 SPCCNSICCSYS-----CTLRCTFCCSNRCGTSCCPSSGILCCFAILCWCCSNPASGSLH 427
S CC+ S S C+ CCS++ SCC CC CCS
Sbjct: 223 SSCCSKKDSSPSEKPSCCSQEKKSCCSSK-KPSCCSQEKKGCCSTEKTSCCSQEKKSCCT 281
Query: 428 S-PCSCC 445
S SCC
Sbjct: 282 SEKPSCC 288
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.1 bits (57), Expect = 1.7
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +2
Query: 287 CSYSCTLRCTFCCSNRCGTSCCPSSGILCCFAILCWCCSNPASGSLHSPCS 439
C TL T S+ C T+ CP G L C L W +G L + S
Sbjct: 79 CYCGSTLTATEVSSSLC-TTPCPGYGSLMCGGDLYWSVYLTGNGVLQTTVS 128
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1283
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Frame = -1
Query: 221 CPAG--DINLCSVWRNVLRYSLSVSHVGWSNQRSS-----GYCWNSC 102
C AG D++ C+ W Y + NQ +S YCWN C
Sbjct: 1237 CSAGVTDMSECNTWSYQKSYDYITGCNNYDNQGNSQTDASDYCWNVC 1283
>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 386 LCWCCSNPASGSLHSPCSCCICCRLPI 466
LC C S P+ G H P C LPI
Sbjct: 297 LCACHSIPSRGGFHCPRCKAKVCTLPI 323
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = +2
Query: 308 RCTFCCSNRCGTSCCPSSGILCCFAILCWCCSNPASGSLHSPCSCCICCR 457
+C C + SC P I C F IL A G+ + C +C R
Sbjct: 205 KCVICLDSPENLSCTPCGHIFCNFCIL------SALGTTAATQKCPVCRR 248
>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 296
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 299 SYRSSKWSCNRGYGRSEGRCCYQRTQCPAGDINLCSVWRN 180
+YRS +W+ E CC C + +I +C V RN
Sbjct: 52 TYRS-RWAYVNDPQIGEINCCLNGWLCESNNILVCDVCRN 90
>SPCC1020.08 |||wybutosine biosynthesis protein
Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 688
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Frame = +2
Query: 260 RSPCCNSICCSYSCTLRCTFCC---SNRCGTS 346
RS C S +C +CTFC +N GTS
Sbjct: 344 RSHLCMEATPSLACANKCTFCWRHGTNPVGTS 375
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 24.6 bits (51), Expect = 9.0
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = +2
Query: 254 SCRSPCCNSICC 289
+CR+PCC+ + C
Sbjct: 292 ACRTPCCDKLFC 303
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -3
Query: 480 RVLDHMGSRQHMQQEQGECREPLAGLEQHQHSMAKQHR 367
R L HM +Q QQ+Q + ++ +Q Q +Q +
Sbjct: 251 RSLQHMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 288
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3
Query: 459 SRQHMQQEQGECREPLAGLEQHQHSMAKQHRMPLLGQQE 343
S QHMQQ+Q + ++ +Q Q +Q + QQ+
Sbjct: 252 SLQHMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQK 290
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,580,596
Number of Sequences: 5004
Number of extensions: 28076
Number of successful extensions: 110
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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