Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314C08f
         (506 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9BUE0 Cluster: Mediator of RNA polymerase II transcrip...    60   4e-08
UniRef50_UPI0000584AE0 Cluster: PREDICTED: hypothetical protein;...    52   7e-06
UniRef50_A7S476 Cluster: Predicted protein; n=1; Nematostella ve...    51   1e-05
UniRef50_Q59ZI8 Cluster: Putative uncharacterized protein; n=1; ...    33   3.7  

>UniRef50_Q9BUE0 Cluster: Mediator of RNA polymerase II
           transcription subunit 18; n=25; Coelomata|Rep: Mediator
           of RNA polymerase II transcription subunit 18 - Homo
           sapiens (Human)
          Length = 208

 Score = 59.7 bits (138), Expect = 4e-08
 Identities = 29/42 (69%), Positives = 35/42 (83%)
 Frame = +2

Query: 347 EYLLQGSVLDSAVEVLLHRLRGLCDNVDAGPETFDDQEVVQL 472
           EYLLQGSVLD ++E L+HRLRGLCDN++  PETF D E+V L
Sbjct: 20  EYLLQGSVLDHSLESLIHRLRGLCDNME--PETFLDHEMVFL 59


>UniRef50_UPI0000584AE0 Cluster: PREDICTED: hypothetical protein;
           n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 203

 Score = 52.0 bits (119), Expect = 7e-06
 Identities = 25/41 (60%), Positives = 32/41 (78%)
 Frame = +2

Query: 344 QEYLLQGSVLDSAVEVLLHRLRGLCDNVDAGPETFDDQEVV 466
           QEYLL GS++D+A + LL RL+ LCDNV+  PETF D E+V
Sbjct: 24  QEYLLVGSIMDAASDSLLLRLKALCDNVEI-PETFRDHEMV 63


>UniRef50_A7S476 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 162

 Score = 51.2 bits (117), Expect = 1e-05
 Identities = 25/40 (62%), Positives = 26/40 (65%)
 Frame = +2

Query: 347 EYLLQGSVLDSAVEVLLHRLRGLCDNVDAGPETFDDQEVV 466
           EYLLQGSV    VE LLHRLRGLCDN       F D E+V
Sbjct: 14  EYLLQGSVAKENVETLLHRLRGLCDNTAHDATKFADHEMV 53


>UniRef50_Q59ZI8 Cluster: Putative uncharacterized protein; n=1;
           Candida albicans|Rep: Putative uncharacterized protein -
           Candida albicans (Yeast)
          Length = 277

 Score = 33.1 bits (72), Expect = 3.7
 Identities = 14/37 (37%), Positives = 25/37 (67%)
 Frame = +2

Query: 122 MDYLD*MHLYETEKSFISVMISWLTHSSSKLKSLNSC 232
           M+YL  + LYE++K+ I+ +  W T+ + KL ++ SC
Sbjct: 1   MNYLTTIQLYESKKNVINDIQLWSTNKTLKLPTITSC 37


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 429,875,195
Number of Sequences: 1657284
Number of extensions: 7378065
Number of successful extensions: 16145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16144
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30528237263
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)