Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314C08f
         (506 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006625-3|AAK68280.1|  232|Caenorhabditis elegans Mediator prot...    30   1.1  
AL023838-2|CAA19505.1|  452|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z77136-5|CAB00882.1| 1152|Caenorhabditis elegans Hypothetical pr...    27   7.8  
U39853-1|AAK39227.2|  390|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>AC006625-3|AAK68280.1|  232|Caenorhabditis elegans Mediator protein
           18 protein.
          Length = 232

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +2

Query: 302 DSLSQALKANIIP--NQEYLLQGSVLDSAVEVLLHRLRGLCDNVDAGPETFDDQEV 463
           D   + L  N  P   QE +L GS+    V  L  RL GLC   D G E F + E+
Sbjct: 10  DGTQEKLSVNSTPYQTQECVLYGSIFAKNVPDLERRLAGLC---DPGCEEFFEHEM 62


>AL023838-2|CAA19505.1|  452|Caenorhabditis elegans Hypothetical
           protein Y43C5A.2 protein.
          Length = 452

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 501 THRXDCEIDPS*TTSWSSNVSGPASTLSQRP 409
           TH+ D  +  + + +WS+N+S P++T +  P
Sbjct: 144 THQRDSTLSTTISIAWSTNISPPSTTSTPEP 174


>Z77136-5|CAB00882.1| 1152|Caenorhabditis elegans Hypothetical protein
            ZC376.6 protein.
          Length = 1152

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 344  QEYLLQGSVLDSAVEVLLHRLRGLCDN 424
            ++ LL GS LD+   VL+H L  +CD+
Sbjct: 929  EKELLTGSYLDTQHSVLIHALIEVCDS 955


>U39853-1|AAK39227.2|  390|Caenorhabditis elegans Hypothetical
           protein F13B9.6 protein.
          Length = 390

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 363 AQCWTRQ*KFYFTDYVVFVTMLMLGQKHLMTRKWFSSDLSHS 488
           A C+++        +V  +T L++   H++ R+W  SD + S
Sbjct: 336 AHCYSQPALIATCTFVFVITALLVSMVHVVYRRWTKSDKTSS 377


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,101,179
Number of Sequences: 27780
Number of extensions: 183105
Number of successful extensions: 327
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)