Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314C08f
(506 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g22720.2 68417.m03278 glycoprotease M22 family protein simila... 29 1.8
At4g22720.1 68417.m03277 glycoprotease M22 family protein simila... 29 1.8
At3g25410.1 68416.m03160 bile acid:sodium symporter family prote... 29 1.8
At1g27620.1 68414.m03373 transferase family protein similar to h... 29 2.4
At1g74600.1 68414.m08641 pentatricopeptide (PPR) repeat-containi... 27 7.3
At5g67110.1 68418.m08461 basic helix-loop-helix (bHLH) family pr... 27 9.6
At3g61960.1 68416.m06959 protein kinase family protein contains ... 27 9.6
At1g16060.2 68414.m01927 ovule development protein, putative sim... 27 9.6
At1g16060.1 68414.m01926 ovule development protein, putative sim... 27 9.6
>At4g22720.2 68417.m03278 glycoprotease M22 family protein similar
to sialylglycoprotease [Haemophilus ducreyi] GI:6942294;
contains Pfam profile PF00814: Glycoprotease family
Length = 353
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 458 PGHQMFLAQHQHCHKDHVIGEVKLLLPSPTLSPE 357
PGH + H H DHV+ VK L + ++PE
Sbjct: 40 PGHGFLPRETAHHHLDHVLPLVKSALETSQVTPE 73
>At4g22720.1 68417.m03277 glycoprotease M22 family protein similar
to sialylglycoprotease [Haemophilus ducreyi] GI:6942294;
contains Pfam profile PF00814: Glycoprotease family
Length = 353
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 458 PGHQMFLAQHQHCHKDHVIGEVKLLLPSPTLSPE 357
PGH + H H DHV+ VK L + ++PE
Sbjct: 40 PGHGFLPRETAHHHLDHVLPLVKSALETSQVTPE 73
>At3g25410.1 68416.m03160 bile acid:sodium symporter family protein
low similarity to SP|Q14973 Sodium/bile acid
cotransporter (Na(+)/bile acid cotransporter) {Homo
sapiens}; contains Pfam profile PF01758: Sodium Bile
acid symporter family
Length = 431
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 200 SSSKLKSLNSCY*SRFSDFQLHKMSANAAPITA 298
SSS L SL+S S F DF+L + ++ P+ A
Sbjct: 39 SSSPLSSLHSSSLSNFLDFRLRRRNSGLVPVVA 71
>At1g27620.1 68414.m03373 transferase family protein similar to
hypersensitivity-related gene product HSR201 - Nicotiana
tabacum, EMBL:X95343; contains Pfam transferase family
domain PF00248
Length = 442
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +2
Query: 146 LYETEKSFISVMISWLTHSSSKLKSLNSCY*SRFSDFQLHKMSANAAPITATDSLSQAL 322
LYE + + +S + S L +L+ + RFS L+ + +P+T DSLS+ L
Sbjct: 8 LYEENQPTLITPLSPTPNHSLYLSNLDDHHFLRFSIKYLYLFQKSISPLTLKDSLSRVL 66
>At1g74600.1 68414.m08641 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 895
Score = 27.1 bits (57), Expect = 7.3
Identities = 23/103 (22%), Positives = 46/103 (44%)
Frame = +2
Query: 173 SVMISWLTHSSSKLKSLNSCY*SRFSDFQLHKMSANAAPITATDSLSQALKANIIPNQEY 352
+VM+S T S+ +L R S +++ + + I+A S +A+ + +
Sbjct: 320 TVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSV-ISACGRPSMVCEASQV-HAWV 377
Query: 353 LLQGSVLDSAVEVLLHRLRGLCDNVDAGPETFDDQEVVQLGSI 481
G LDS+V L + ++D + F+D + +Q +I
Sbjct: 378 FKSGFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNI 420
>At5g67110.1 68418.m08461 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 210
Score = 26.6 bits (56), Expect = 9.6
Identities = 20/66 (30%), Positives = 27/66 (40%)
Frame = +2
Query: 197 HSSSKLKSLNSCY*SRFSDFQLHKMSANAAPITATDSLSQALKANIIPNQEYLLQGSVLD 376
H S K NS R D Q H +S + + K +IPN + S+LD
Sbjct: 78 HKRSGAKQRNSL--KRNIDAQFHNLSEKKRRSKINEKMKALQK--LIPNSNKTDKASMLD 133
Query: 377 SAVEVL 394
A+E L
Sbjct: 134 EAIEYL 139
>At3g61960.1 68416.m06959 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 626
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 380 PSPTLSPEVSIPDL 339
P PT +PE SIPDL
Sbjct: 495 PDPTTAPETSIPDL 508
>At1g16060.2 68414.m01927 ovule development protein, putative
similar to ovule development protein AINTEGUMENTA
(GI:1209099)[Arabidopsis thaliana]
Length = 275
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 458 PGHQMFLAQHQHCHKDHVIGEVKLLLPSPTLSPEVSIP 345
P H+ L+Q Q +D+ + KLL SP ++ EV P
Sbjct: 182 PNHESDLSQSQSSSEDNDDRKTKLLKSSPLVAEEVIGP 219
>At1g16060.1 68414.m01926 ovule development protein, putative
similar to ovule development protein AINTEGUMENTA
(GI:1209099)[Arabidopsis thaliana]
Length = 345
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 458 PGHQMFLAQHQHCHKDHVIGEVKLLLPSPTLSPEVSIP 345
P H+ L+Q Q +D+ + KLL SP ++ EV P
Sbjct: 252 PNHESDLSQSQSSSEDNDDRKTKLLKSSPLVAEEVIGP 289
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,340,608
Number of Sequences: 28952
Number of extensions: 163294
Number of successful extensions: 419
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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