Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314C07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    31   0.079
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   0.73 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   5.2  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    25   9.0  
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.0  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   9.0  

>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 31.5 bits (68), Expect = 0.079
 Identities = 12/53 (22%), Positives = 30/53 (56%)
 Frame = +2

Query: 8   AIVFIVN*ILFQFVS*SCALIIVKLIQIFLDYFICF*FHVSLSQCWSYYKLIL 166
           ++  +++ +L++  S   +L  +K ++I    +ICF   + +  CW+Y+  I+
Sbjct: 116 SLQIVIDFVLYKLSSAMASLHYLKFVKIIALSYICFSSLIRICHCWTYFIRIM 168


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 16/56 (28%), Positives = 32/56 (57%)
 Frame = +2

Query: 68  IIVKLIQIFLDYFICF*FHVSLSQCWSYYKLILTVFIYFMNTRCYYYNTYLLISSS 235
           I++K+I +FL+  +C  +   ++ C  Y + +   F+Y +  RC   +T  L+SS+
Sbjct: 28  ILLKII-LFLNTIVCIFYVYKIALCNEYIRFLAKCFLYIL--RC--MSTVSLLSSA 78


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 337  RNLAINTFRVLHLALKFCFLSLRRDTL 417
            RNL++ T++V+ LALK   +   +DT+
Sbjct: 2512 RNLSMRTYKVIPLALKTGVIEWVQDTI 2538


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 163 TNCIYILHEY*VLLLQHISPHIIQCLNFIALRKFSSIAMLT 285
           T+C +I  E  ++LLQ +  +I  C     L+ F+SI + +
Sbjct: 17  TSCHFISSENCLVLLQALKINIYLCSEVHGLQFFTSIPLFS 57


>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 112 TNEVIKKNLNQLHNYQCTTLTNKLKQYLIHNEYNC 8
           T E   + +N L+ YQ   L ++LK  ++    NC
Sbjct: 99  TKENYAQMINSLYRYQDAILKSELKDSILPKLVNC 133


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -1

Query: 344 KFLFIDMLAFILLNKEYKNIVNMAIDENL 258
           KFL + + A +    E+ N ++ A++EN+
Sbjct: 758 KFLGLTLFALVPNTTEFMNAISFALNENI 786


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,884,053
Number of Sequences: 5004
Number of extensions: 36643
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)