Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314C07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0106 + 6814391-6817007,6817086-6817462                           30   0.98 
03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-65...    30   1.3  
04_01_0072 - 784922-785567,785673-786406                               29   1.7  
08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617     28   5.2  
07_03_1706 + 28855669-28855801,28856013-28856044,28856158-288562...    27   9.1  

>02_02_0106 + 6814391-6817007,6817086-6817462
          Length = 997

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 347 AKFLFIDMLAFILLNKEYKNIVNMAIDEN-LRSAIKFKHW 231
           A F    M+ F LL+K Y  +VN + DE+ +   IK +HW
Sbjct: 7   ASFFLFFMMPFSLLHKSYPQLVNQSSDEHQILLEIK-RHW 45


>03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-653886,
            654027-654247,654395-654533,654628-654710,654824-655036,
            655099-655494,655587-655758,656085-656276,656363-656569,
            656661-656753,656957-657156,657329-657838,658114-658184,
            658322-658963,659057-659207,659425-659665
          Length = 1360

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 509  KRLKIKNKEIGVVDTNLPND*NIRKNTIIQINVSRRSERKQNF 381
            + LK  NKE  + D ++PN  N  +NT    NV       QN+
Sbjct: 1086 RSLKKINKETSIPDGSIPNTPNATENTSETSNVEETDATNQNY 1128


>04_01_0072 - 784922-785567,785673-786406
          Length = 459

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = +3

Query: 219 SSYHPVLKLYCAS*VFVYCHVNYIFIFFIEKNKSQHIN-KQKLSYQYFSSSSLGFEVLFP 395
           S Y P   +YC   ++VYC   Y+    +   K Q I          +++  LG  +   
Sbjct: 220 SVYVPDTSVYCRGVLYVYCQNKYVMRISLSNGKYQVIKPPSDCEGMAYTNLYLGKSMKGV 279

Query: 396 FTSPRHINLNNRIFSYIL 449
           + + RH  L +R   YIL
Sbjct: 280 YCAVRH--LASRFLIYIL 295


>08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617
          Length = 988

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -2

Query: 100 IKKNLNQ-LHNYQCTTLTNKLKQYLIHNEYNCII 2
           IK+NLNQ L ++Q   L N +K+YL +N Y  +I
Sbjct: 260 IKENLNQPLEDHQ---LINMIKEYLKNNRYFIVI 290


>07_03_1706 +
           28855669-28855801,28856013-28856044,28856158-28856229,
           28856631-28856727,28857195-28857256,28857726-28858024,
           28858306-28858663,28858692-28859297,28859500-28859698,
           28860039-28860101,28860603-28860673
          Length = 663

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 315 KSQHINKQKLSYQYFSSSSLG 377
           KS H    +L+ +YF+SSSLG
Sbjct: 292 KSHHCLSMRLTLEYFTSSSLG 312


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,342,026
Number of Sequences: 37544
Number of extensions: 174685
Number of successful extensions: 373
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)