Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314C07f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_46333| Best HMM Match : EGF (HMM E-Value=1.10001e-40)               28   4.1  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     27   7.1  

>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
 Frame = -2

Query: 136  AKGNVESETNEVIKKNLNQLHNYQC------TTLTNKLKQYLIHNE 17
            AK  V  + NE +KK L   HN +       T+  +KL+ Y++  E
Sbjct: 3565 AKNKVTEKENEFLKKELGNTHNREAELKLDFTSTNSKLQSYVLERE 3610


>SB_46333| Best HMM Match : EGF (HMM E-Value=1.10001e-40)
          Length = 580

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +1

Query: 256 RKFSSIAMLTIFLYSLLRRIKANISINRNLAINTFRVLHLAL 381
           R+  ++AMLT+ + + L R  AN++++  +  +T R+L  AL
Sbjct: 272 RRVYTVAMLTLHVITSLARTLANVAMDSPVMDSTARILTNAL 313


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = -2

Query: 151  IRPALAKGNVESETNEVIKKNLNQLHNYQCTTLTNKLKQYL 29
            +R    K N E E     KK L  LHN +   L N LKQ L
Sbjct: 1386 LREDFNKVNAEHERE---KKELKSLHNKELQELQNNLKQQL 1423


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,977,234
Number of Sequences: 59808
Number of extensions: 231476
Number of successful extensions: 457
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)