Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314C07f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50312-6|AAL65771.1| 106|Caenorhabditis elegans Hypothetical pr... 31 0.50
AC024842-7|AAF59620.1| 457|Caenorhabditis elegans Hypothetical ... 30 1.2
Z81504-2|CAB04119.1| 351|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical p... 27 6.2
AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical ... 27 6.2
AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical ... 27 6.2
AL110478-10|CAE17956.3| 758|Caenorhabditis elegans Hypothetical... 27 8.1
AF039051-13|AAB94269.1| 300|Caenorhabditis elegans Hypothetical... 27 8.1
>U50312-6|AAL65771.1| 106|Caenorhabditis elegans Hypothetical
protein B0222.10 protein.
Length = 106
Score = 31.1 bits (67), Expect = 0.50
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +3
Query: 411 HINLNNRIFSYILIV--W*VSVYYTYFFIFNFKP 506
HINL N +++L++ + +YY FF+F F P
Sbjct: 53 HINLFNNFVTFLLVIFLYIFLIYYVTFFVFPFGP 86
>AC024842-7|AAF59620.1| 457|Caenorhabditis elegans Hypothetical
protein Y59H11AR.4 protein.
Length = 457
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +2
Query: 128 SLSQCWSYY---KLILTVFIYFMNTRCYYYNTYLLISS 232
SL W Y+ +L+L +FIY + T ++TY +SS
Sbjct: 353 SLKSIWKYHPKPRLLLDIFIYVLGTYVMVHSTYHSLSS 390
>Z81504-2|CAB04119.1| 351|Caenorhabditis elegans Hypothetical
protein F15H9.2 protein.
Length = 351
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = +3
Query: 195 GVITTTHISSYHPVLKLYCAS*VFVYCHVNYIFIFFIEKNKSQHINKQKLSYQYFSSSSL 374
G T S H + +Y +F + + + F N +Q+I++ + +YF + +L
Sbjct: 80 GYNTGVEFISSHTSMSIYVF--IFAFELPSALLCFVFRHNAAQNISRTAPNKKYFKTFTL 137
Query: 375 GFEVLFPFTS 404
LFPF +
Sbjct: 138 FLTHLFPFAA 147
>Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 27.5 bits (58), Expect = 6.2
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Frame = +3
Query: 216 ISSYHPVLKLYCAS*-VFVYCHVNYIFIFF--IEKNKSQHINKQKLSYQYFSSSSLGFEV 386
I+ HP +KL+ S V ++ F I +K+ I + S Y ++ F
Sbjct: 857 ITGKHPQIKLFLESENVRTATEISGFSTVFNDISSSKAAMILTESYSLMYITAVFQMFVY 916
Query: 387 LFPFTSPRHINLNNRIFSYILIVW*VSVYYTYFFIFNFKPFLCV 518
F P + N +++ W VY+ + ++F FL +
Sbjct: 917 TFSVVLPLRLVSTNMGPQSMILPWPRYVYFGFIYVFQLVVFLVI 960
>AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 27.5 bits (58), Expect = 6.2
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Frame = +3
Query: 216 ISSYHPVLKLYCAS*-VFVYCHVNYIFIFF--IEKNKSQHINKQKLSYQYFSSSSLGFEV 386
I+ HP +KL+ S V ++ F I +K+ I + S Y ++ F
Sbjct: 857 ITGKHPQIKLFLESENVRTATEISGFSTVFNDISSSKAAMILTESYSLMYITAVFQMFVY 916
Query: 387 LFPFTSPRHINLNNRIFSYILIVW*VSVYYTYFFIFNFKPFLCV 518
F P + N +++ W VY+ + ++F FL +
Sbjct: 917 TFSVVLPLRLVSTNMGPQSMILPWPRYVYFGFIYVFQLVVFLVI 960
>AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 27.5 bits (58), Expect = 6.2
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Frame = +3
Query: 216 ISSYHPVLKLYCAS*-VFVYCHVNYIFIFF--IEKNKSQHINKQKLSYQYFSSSSLGFEV 386
I+ HP +KL+ S V ++ F I +K+ I + S Y ++ F
Sbjct: 857 ITGKHPQIKLFLESENVRTATEISGFSTVFNDISSSKAAMILTESYSLMYITAVFQMFVY 916
Query: 387 LFPFTSPRHINLNNRIFSYILIVW*VSVYYTYFFIFNFKPFLCV 518
F P + N +++ W VY+ + ++F FL +
Sbjct: 917 TFSVVLPLRLVSTNMGPQSMILPWPRYVYFGFIYVFQLVVFLVI 960
>AL110478-10|CAE17956.3| 758|Caenorhabditis elegans Hypothetical
protein Y26D4A.13 protein.
Length = 758
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = -1
Query: 509 KRLKIKNKEIGVVDTNLPND*NIRKNT 429
++ KIK K++GV+ N+ N+ NI KNT
Sbjct: 297 RQKKIKKKDLGVIYLNIVNNENI-KNT 322
>AF039051-13|AAB94269.1| 300|Caenorhabditis elegans Hypothetical
protein C14C6.13 protein.
Length = 300
Score = 27.1 bits (57), Expect = 8.1
Identities = 23/79 (29%), Positives = 37/79 (46%)
Frame = +3
Query: 216 ISSYHPVLKLYCAS*VFVYCHVNYIFIFFIEKNKSQHINKQKLSYQYFSSSSLGFEVLFP 395
I Y PVLK Y Y N I+ ++ + K+ + L Y Y+++SS+ + P
Sbjct: 82 IEFYSPVLKEYR------YDTSNNIYNYY-QDYKNYFRPVRVLGYAYYTTSSVWMSGVAP 134
Query: 396 FTSPRHINLNNRIFSYILI 452
F P NL + +F I +
Sbjct: 135 FVKP---NLQSPVFKTISV 150
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,163,269
Number of Sequences: 27780
Number of extensions: 197714
Number of successful extensions: 566
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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