Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314C04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine rece...    29   2.7  
AL132858-1|CAB60474.1|  325|Caenorhabditis elegans Hypothetical ...    27   8.1  

>U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 3 protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 123 FLYYYLGLN*SI*IYCFARLLVLRARCFIFFYFRFKIP 10
           FL+++  L   + +Y    LL   A CF FFY +F IP
Sbjct: 49  FLHFHGNLKCLLIVYFICNLLFSMALCFAFFY-QFLIP 85


>AL132858-1|CAB60474.1|  325|Caenorhabditis elegans Hypothetical
           protein Y113G7A.1 protein.
          Length = 325

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -1

Query: 377 SQKTRIFHYIHVTACYYIFSVNTISSIEFVKAIIYIIILKFSSSFIGN 234
           S+KT    ++ + A     SVNT   I  V A+IYI+ +   +  + N
Sbjct: 224 SKKTIQMQHLLIFALILQASVNTFLFIVPVNAVIYIVYIHHQNQLLNN 271


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,754,628
Number of Sequences: 27780
Number of extensions: 179069
Number of successful extensions: 368
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)