Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314C03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    37   0.002
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    28   0.73 

>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
 Frame = -1

Query: 395 SSIQNLIRDDKLWFTRIMQQIHRHACLWSGIR--FYDIRFSNYR 270
           S + +   DD+L+   ++QQ  + + LWS I+  F+DI+++NYR
Sbjct: 257 SEVDSAEEDDELFQNYVLQQTRKESKLWSFIKKVFHDIKYANYR 300


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 232 CSLLESCNKLDTIVSGL 182
           CSLL  CN+LD + SGL
Sbjct: 146 CSLLYPCNRLDRLTSGL 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,953,879
Number of Sequences: 5004
Number of extensions: 36753
Number of successful extensions: 99
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)