Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314C03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0515 - 24483282-24483478,24486451-24486927,24486949-24489580     29   3.0  
09_03_0042 + 11842263-11842698,11842799-11842896,11843082-118432...    27   9.1  
07_03_1663 - 28449654-28451867                                         27   9.1  

>11_06_0515 - 24483282-24483478,24486451-24486927,24486949-24489580
          Length = 1101

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
 Frame = -1

Query: 473 KIYTPLDLIPEINLNRLYG--IHAFERNSSIQNLIRDDKLWFTRIMQQIHRHACLWSGIR 300
           K+    DL+  +    L G  I     + S   L+   KL +   +Q++HR+ C  S + 
Sbjct: 589 KLPNKFDLLFHLTFLNLSGTDIRVIPSSISKLQLLHTLKLSYCGKLQKLHRNICRLSRLH 648

Query: 299 FYDIRFSNYRNSSIQNLIRDDKL*FTRIL 213
             D+    Y +   QN+ + + L +  +L
Sbjct: 649 KLDLEGCRYLSELPQNISKINSLEYLSVL 677


>09_03_0042 +
           11842263-11842698,11842799-11842896,11843082-11843217,
           11843349-11843509,11843603-11843753,11843855-11843952,
           11844142-11844277,11844404-11844532,11844622-11844720,
           11844814-11844909,11845002-11845100,11845201-11845296,
           11846394-11846628,11846752-11846873,11846993-11847114,
           11847275-11847345,11847940-11848027,11848374-11848439,
           11848676-11848795
          Length = 852

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 98  KTALSNLTDTHAANDKDNSKNEY 166
           K+  SNL D H  ND    K EY
Sbjct: 500 KSTFSNLDDPHQFNDNKQDKTEY 522


>07_03_1663 - 28449654-28451867
          Length = 737

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +3

Query: 294 VKSNPRPETSVSMNLLHDSCKPQLVISN*ILN 389
           V  NP  +  V +++L + CKP ++  N +++
Sbjct: 359 VVDNPSEQLDVLVSMLQEGCKPDVITMNTVIH 390


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,740,935
Number of Sequences: 37544
Number of extensions: 193223
Number of successful extensions: 415
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)