Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314C03f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56972| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_40697| Best HMM Match : ABC_tran (HMM E-Value=7.1e-07)              30   1.3  
SB_32343| Best HMM Match : M20_dimer (HMM E-Value=0.0021)              29   3.1  
SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_40156| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_38919| Best HMM Match : Fumarate_red_D (HMM E-Value=4.7)            27   9.4  

>SB_56972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 868

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 44  RHYYIYLYTAIFISKIKKKTALSNLTDTHAANDKDNSK 157
           R+ Y+ +  AIF++ + + T L   T  HA + K ++K
Sbjct: 5   RYVYVVINVAIFVTSVTRSTFLFRTTLRHAGDSKGDAK 42


>SB_40697| Best HMM Match : ABC_tran (HMM E-Value=7.1e-07)
          Length = 659

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +3

Query: 294 VKSNPRPETSVSMNLLHD 347
           VKSNPR E   S+N+LHD
Sbjct: 393 VKSNPRQENDKSVNILHD 410


>SB_32343| Best HMM Match : M20_dimer (HMM E-Value=0.0021)
          Length = 130

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -1

Query: 416 IHAFERNSSIQNLIRDDKLWFTRIMQQIHRHACLWSGIRFYDIRFSNYRNSSI 258
           +H F  N+++  ++ D  +  T   Q  H  A  W G+   D     Y N S+
Sbjct: 16  VHPFPSNTTMPTVLADKVVMATFKGQTTHAAAFPWEGVNALDAAIMAYSNLSM 68


>SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 59  YLYTAIFISKIKKKTALSNLTDTHAANDKDNSKNEYRKI 175
           + Y + F + I  K++ S  TD+H  +D+     E RKI
Sbjct: 258 FSYCSDFNNSIDSKSSTSGFTDSHEESDEIEKAAERRKI 296


>SB_40156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/85 (21%), Positives = 44/85 (51%)
 Frame = -1

Query: 491 SKLLLIKIYTPLDLIPEINLNRLYGIHAFERNSSIQNLIRDDKLWFTRIMQQIHRHACLW 312
           S+ +L+K +  + +I   +  +L  ++  E  + +QN+ RD+  W    +Q ++R     
Sbjct: 187 SQFVLLKTFIAIKIIQIGDWAKLQNVYRDEDGAKLQNVYRDED-WAK--LQNVYRDE--- 240

Query: 311 SGIRFYDIRFSNYRNSSIQNLIRDD 237
            G +  ++ + +   + +QN+ RD+
Sbjct: 241 DGAKLQNV-YRDEDGAKLQNVYRDE 264


>SB_38919| Best HMM Match : Fumarate_red_D (HMM E-Value=4.7)
          Length = 479

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 77  FISKIKKKTALSNLTDTHAANDKDNSKNEYRKI*SQTRDNR 199
           ++  +KK+   S+L +    +D DN KN+ R+     RD+R
Sbjct: 311 YLEDLKKRLKDSDLGNDEDVDDDDNDKNDERQRDFLQRDSR 351


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,110,715
Number of Sequences: 59808
Number of extensions: 248718
Number of successful extensions: 575
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)