Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314C02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.56 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   5.2  
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    25   5.2  
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   6.8  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    25   9.0  

>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -1

Query: 182 VYLYILKSLYRTFNFFFIVAYKIWQRCMVNGYDYPLFFCF-SIFYIVFMILNNKYFV 15
           ++LY +  LY+T+  +F ++ K + R +     Y ++FC+ + F  +F ++    FV
Sbjct: 22  IWLYEVYMLYKTYTSYFFMSSKSFVRGVKR---YLIYFCYCANFIALFRVIFGTIFV 75


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = -1

Query: 137  FFIVAYKIWQRCMVNGYDYPLFFCFSIFY---IVFMILNNKYFVL 12
            F +  + IW+R     Y   L F  +IFY   I +  + N  F++
Sbjct: 1262 FAVQKHGIWRRTFTGLYIVHLLFLLTIFYPCPIAYTYVRNSIFLI 1306


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 119 KIWQRCMVNGYDYPLFFC 66
           K W+R MVN Y   + FC
Sbjct: 343 KNWERAMVNSYTSLIIFC 360


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -2

Query: 502 LRVVTLPNILCPTLNN*FKFN--SEFI*LCFFYKKITTEEIKETNNQ 368
           LR+ TL   L P+ N+ F FN  +EF+ L     ++  EE  +  ++
Sbjct: 154 LRIPTLAIHLDPSANSSFSFNMETEFVPLIGLENELAKEETSDNGDK 200


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 366 NNKDIQSNKFVIAKFIELKICXSEKKTERNILIL 265
           N K  Q N  +    I  +IC + +K E NIL+L
Sbjct: 422 NYKQSQLNIILTETTIRPRICAAYQKLEYNILVL 455


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -1

Query: 179 YLYILKSLYRT-FNFFFIVAYKIWQRCMVNG-YDYPLFFCFSIFYIVFMI 36
           Y ++L++ +    +FFFI  Y    R +  G Y YP    ++I  I+F++
Sbjct: 74  YGFLLRAFHANGASFFFIFLYLHIGRGLYYGSYKYPRTMTWNIGVIIFLL 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,524,016
Number of Sequences: 5004
Number of extensions: 24633
Number of successful extensions: 44
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)