Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314C02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98866-11|CAB11564.2|  335|Caenorhabditis elegans Hypothetical p...    28   4.7  
U80842-17|AAB37953.1|  155|Caenorhabditis elegans Hypothetical p...    28   4.7  
U62896-1|AAB17868.1|  335|Caenorhabditis elegans PIE-1 protein.        28   4.7  
U39741-1|AAA80429.2|  301|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z98866-11|CAB11564.2|  335|Caenorhabditis elegans Hypothetical
           protein Y49E10.14 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 247 SDVRDICHNSVSPH*EYKARCRYIYI 170
           S+ R ICHN    +  Y  RCR+I++
Sbjct: 184 SNRRQICHNFERGNCRYGPRCRFIHV 209


>U80842-17|AAB37953.1|  155|Caenorhabditis elegans Hypothetical
           protein ZC239.16 protein.
          Length = 155

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = -1

Query: 119 KIWQRCMVNGYDYPLFFCFSIFYIV-----FMILNNKYFVLEKK 3
           +I QR     YD   FF FSI ++V     +M     YF++EK+
Sbjct: 106 QIDQRANTKKYDLSWFFVFSIIFLVLVFVYYMPALKGYFIVEKR 149


>U62896-1|AAB17868.1|  335|Caenorhabditis elegans PIE-1 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 247 SDVRDICHNSVSPH*EYKARCRYIYI 170
           S+ R ICHN    +  Y  RCR+I++
Sbjct: 184 SNRRQICHNFERGNCRYGPRCRFIHV 209


>U39741-1|AAA80429.2|  301|Caenorhabditis elegans Hypothetical
           protein F12D9.1a protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +2

Query: 173 INIPTSSFIFLVR*HTVMTDVTHVRIRHDHFRIRMFL 283
           I++ + +  F +R +T +TDV  +RI + HF +R+ L
Sbjct: 162 ISLASLALFFSLR-NTTLTDVLPLRIENVHFSVRLGL 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,309,183
Number of Sequences: 27780
Number of extensions: 133990
Number of successful extensions: 300
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)