Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314C01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0170 - 14871985-14872110,14872239-14872454,14872541-148725...    30   1.3  
08_02_1577 + 27985066-27985434,27985520-27985594,27986159-279863...    27   9.1  

>12_02_0170 -
           14871985-14872110,14872239-14872454,14872541-14872588,
           14872960-14873061,14873144-14873254,14873388-14873483,
           14873579-14873697,14874014-14874095,14874149-14874218,
           14874320-14874382,14874487-14874602,14874731-14874817
          Length = 411

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +1

Query: 34  WVYKFRDVVKWREPTTVIVRAVCPPLSIPKRTVSRITNLKGIM 162
           WV  F+ V+  +  T VIV+AV    ++   +V  I NL+GI+
Sbjct: 351 WVL-FKTVIDVKGDTEVIVKAVDSSANVQPESVETIWNLRGIL 392


>08_02_1577 +
           27985066-27985434,27985520-27985594,27986159-27986320,
           27986415-27986590,27986681-27986756,27987154-27987282,
           27987363-27987482,27987734-27987815,27988016-27988110,
           27988427-27988491,27988604-27988802,27989426-27989620,
           27989866-27989960,27990059-27990194,27990265-27990482,
           27990729-27990856,27991148-27991617
          Length = 929

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 397 KALFHNWH*IDLTHNL 350
           KALF+NWH  D  +NL
Sbjct: 302 KALFYNWHYADAMYNL 317


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,092,093
Number of Sequences: 37544
Number of extensions: 205041
Number of successful extensions: 312
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)