Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314C01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_18444| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 101 HTARTI-TVVGSRHLTTSLNLYTQQPH 24
           H+ART+ T+    H T +LN++TQ  H
Sbjct: 7   HSARTLNTLTQHAHSTCTLNMHTQHAH 33



 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 101 HTARTI-TVVGSRHLTTSLNLYTQQPH 24
           H+ART+ T+    H T +LN++TQ  H
Sbjct: 159 HSARTLNTLTQHAHSTCTLNMHTQHAH 185


>SB_18444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 333 KKVHQFSYLXXXKYFSFCVSFADIR 259
           K + +  +L    YFSFC+ F D+R
Sbjct: 43  KHIAREKFLSSVDYFSFCLKFCDLR 67


>SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 821

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 34  WVYKFRDVVKWREPTTVIV 90
           WVYK+RDV  W +P T +V
Sbjct: 647 WVYKYRDVRPW-DPLTDLV 664


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,501,461
Number of Sequences: 59808
Number of extensions: 254862
Number of successful extensions: 414
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)