Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314C01f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44940.1 68418.m05512 F-box family protein contains F-box dom...    30   0.82 
At5g45120.1 68418.m05539 aspartyl protease family protein contai...    29   1.9  
At5g45380.1 68418.m05577 sodium:solute symporter family protein ...    28   4.4  
At5g44480.1 68418.m05450 NAD-dependent epimerase/dehydratase fam...    27   7.7  

>At5g44940.1 68418.m05512 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 377

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 417 YSRKAILKPFFIIGIKSI*HTILCYNFKKKVHQFS 313
           YSR   +   F+  I S+ HTI+CY+  K ++ +S
Sbjct: 209 YSRNRDIIGDFLTVISSVRHTIICYSTSKMLYSYS 243


>At5g45120.1 68418.m05539 aspartyl protease family protein contains
           Pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 491

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -1

Query: 197 KIGLINTPYSYCMIPFRFVIRETVRLGIERGGHTARTITVVGSRHLTTSLN 45
           ++G +   +S+C +PF+FV    +   +  G  +A +I +  S   T  LN
Sbjct: 245 QLGFLEKGFSHCFLPFKFVNNPNISSPLILGA-SALSINLTDSLQFTPMLN 294


>At5g45380.1 68418.m05577 sodium:solute symporter family protein
           contains Pfam profile: PF00474 sodium:solute symporter
           family
          Length = 694

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 55  VVKWREPTTVIVRAVCPPLSIPKRTVSR 138
           +VKW    T+++  + P LS+P R  SR
Sbjct: 582 IVKWGLVFTILIVVIWPVLSLPARVFSR 609


>At5g44480.1 68418.m05450 NAD-dependent epimerase/dehydratase family
           protein similar to SP|P55180 UDP-glucose 4-epimerase (EC
           5.1.3.2) from Bacillus subtilis, GI:3021357
           UDP-galactose 4-epimerase from Cyamopsis tetragonoloba;
           contains Pfam profile PF01370 NAD dependent
           epimerase/dehydratase family
          Length = 436

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 400 DCLSRILSNVKTGKGILVLMILIKLTCLCCFKNSLFTAP 516
           DCL     N  TGK +LV  +LI L  +   ++S FT+P
Sbjct: 47  DCLEPKTKNNLTGKLLLVASLLI-LAIIVISQSSSFTSP 84


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,065,556
Number of Sequences: 28952
Number of extensions: 177502
Number of successful extensions: 296
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)