Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314B12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa...    27   1.3  
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    27   2.2  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    26   3.0  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    26   3.0  
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    26   3.9  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    25   6.8  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   9.0  

>SPAC4D7.09 |tif223||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = -3

Query: 189 MINESKTLQDNCSLGANVLNQCLLKKKGFLLSN 91
           M+NE  T++DN ++  +++ +  +  KG ++SN
Sbjct: 371 MVNEGTTIKDNSNIKKSIIGKNCVIGKGVVVSN 403


>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
 Frame = -2

Query: 505 CVPLRLRSRVCRWRANATARPRQDIGSIDVRPHGDPARSPLICVFFMRTGSPCS------ 344
           C   R  SRV  + AN  A+ +  +G+  +       + P +C+  ++ G P        
Sbjct: 33  CCYNRTTSRVDEFLANE-AKGKSIVGAHSLEEFVSKLKKPRVCILLVKAGKPVDYLIEGL 91

Query: 343 KDISKPGELIT*IPNQHTPPKT 278
             + + G++I    N H P  T
Sbjct: 92  APLLEKGDIIVDGGNSHYPDTT 113


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -3

Query: 192 FMINESKTLQDNCSLGANVLNQCLL---KKKGFLLSNGGGNKKVGERQHAQ 49
           FMI E+  ++D     AN+++  +    KKK  L++ GGG  K  +R   Q
Sbjct: 103 FMIFETAKIEDCIQFMANLIDNHVKNCNKKKITLIATGGGAYKFYDRMSKQ 153


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 12  RAIIRTKRMHRTAARAVSLLLFYFHPHSIK 101
           R +++   MH    R +S L    HPH IK
Sbjct: 67  RQLLKKSDMHMRVEREISYLKLLRHPHIIK 96


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +3

Query: 288 GVCWLGIYVMSSPGLEMSLEHGLPVLMKKTQMSGDRAGSPCGLTSILPMSCRGRAVAFA 464
           G C  G   + S  LE++ E     + K  Q    + GS C L  +LP   + +  AFA
Sbjct: 47  GTCTSGKNCIFSHDLELATEK---TICKYFQKGNCKFGSKCALEHVLPDGRKVKTRAFA 102


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 117 KKKGFLLSNGGGNKKVGERQHAQPSDACASCE 22
           +KK  LL N  G K++ + +     D+C S +
Sbjct: 179 RKKDELLKNRKGKKEISDSEPESDHDSCVSTD 210


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 362 PHEEDADERRSRRITVRSDIDTADV 436
           P +E  D  + R ITV  DIDT ++
Sbjct: 514 PDKETFDLNQFRNITVGDDIDTTEL 538


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,225,997
Number of Sequences: 5004
Number of extensions: 45816
Number of successful extensions: 101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)