Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314B12f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0261 + 11214086-11214148,11215019-11215462,11216504-112166... 29 1.7
04_01_0204 + 2467657-2467781,2467955-2468044,2469071-2469169,246... 28 5.2
01_06_1140 - 34836967-34836996,34837107-34838771 28 5.2
09_04_0214 + 15711576-15711891,15712615-15713903,15714410-157151... 27 6.9
07_01_0743 + 5678086-5678098,5678436-5678560,5678666-5678800,567... 27 6.9
04_01_0425 + 5609819-5610331,5610450-5610664,5612720-5612959,561... 27 6.9
12_02_0646 + 21484532-21484656,21484759-21484774 27 9.1
10_08_0347 - 17032996-17033295 27 9.1
04_01_0430 + 5651326-5651820,5651886-5652124,5652265-5652507,565... 27 9.1
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 27 9.1
>05_03_0261 +
11214086-11214148,11215019-11215462,11216504-11216666,
11218145-11218441,11218842-11218858
Length = 327
Score = 29.5 bits (63), Expect = 1.7
Identities = 23/65 (35%), Positives = 32/65 (49%)
Frame = -3
Query: 294 TRLRKPHTLLVLAPDRVPLNKVSVYLY*LLNECKFMINESKTLQDNCSLGANVLNQCLLK 115
+R+ ++LL+L P R + +Y + KF INESK Q N N LLK
Sbjct: 225 SRIANIYSLLLLLPKRAEQEIMPQIVYIIFIREKF-INESKGFQANMLGDLNKDLVLLLK 283
Query: 114 KKGFL 100
+KG L
Sbjct: 284 EKGSL 288
>04_01_0204 +
2467657-2467781,2467955-2468044,2469071-2469169,
2469353-2469371,2469965-2470021,2470585-2471265,
2471639-2471742,2471919-2472057,2472173-2472334,
2472565-2472681
Length = 530
Score = 27.9 bits (59), Expect = 5.2
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Frame = +2
Query: 233 LLSGTRSGARTKSVCGFRRRVLVGYLCDEFPWLGDVLGARASRPHEEDADERRSRRITVR 412
LL+G R+G+ T + G RR +L D A ASR + D DE S +TV
Sbjct: 37 LLAGLRAGS-TAAASGTRR-----WLRDSSWPATAAAAAAASRGDDGDGDEASSAAMTVP 90
Query: 413 SDIDTADVLPRACR---RVRAPPTNTAT 487
+D + + RV AP N A+
Sbjct: 91 GAVDDPEEVVSQVHISDRVAAPEKNEAS 118
>01_06_1140 - 34836967-34836996,34837107-34838771
Length = 564
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 381 MSGDRAGSPCGLTSILPMSCRGRAVAFARHL 473
+SG A SP LTS++ + R A A RH+
Sbjct: 32 VSGRLAASPAALTSLVSLYARAAAPALHRHV 62
>09_04_0214 +
15711576-15711891,15712615-15713903,15714410-15715117,
15715369-15715908
Length = 950
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 284 RRRVLVGYLCDEFPWLGDVLGARASRPHEE-DADERRSRRIT 406
RRRV VG + D WLG++ A E+ ADE R+ T
Sbjct: 45 RRRVEVGVILDRRTWLGNISWACMELAVEDFYADEERASYTT 86
>07_01_0743 +
5678086-5678098,5678436-5678560,5678666-5678800,
5679128-5679200,5679581-5679654,5680292-5680396,
5680637-5680881,5680965-5681052,5681202-5681244,
5681319-5681475,5681648-5681776,5682012-5682084,
5682281-5682445,5682530-5682544,5682651-5682780,
5684517-5684651,5684880-5684945,5685088-5685170,
5685503-5685549,5685736-5685814,5685914-5686006
Length = 690
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 243 EHDQGPGLKVYVVFGGVCWLGIYV-MSSPGLEMSLEHGLPVLMKKTQMSGDRAGS 404
EH +GP LKV ++ G+ + V + G E+ L P + K DR G+
Sbjct: 15 EHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDLYESRPFIGGKVGSFVDRKGN 69
>04_01_0425 +
5609819-5610331,5610450-5610664,5612720-5612959,
5613122-5613232,5613789-5613987,5614097-5614453
Length = 544
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 348 HGLPVLMKKTQMSGDRAGSPCGLTSILPMSCRGRAVAFAR 467
HG+PVL+K + DR + G S+L R A AR
Sbjct: 95 HGVPVLLKDIIATRDRLNTTAGSLSLLGAVARRDAGVVAR 134
>12_02_0646 + 21484532-21484656,21484759-21484774
Length = 46
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 32 AHASDGCACCLSPTFLFPPPFDKRNPF 112
A AS CC S L P P +KR PF
Sbjct: 2 AAASPCSGCCFSRRRLLPLPNNKRTPF 28
>10_08_0347 - 17032996-17033295
Length = 99
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 251 SGARTKSVCGFRRRVLVGYLCDEFPWLGDVLGAR 352
+G + G R+L GYL EF G VLG R
Sbjct: 22 AGGSPDAAPGAGSRLLAGYLAHEFLTAGTVLGER 55
>04_01_0430 +
5651326-5651820,5651886-5652124,5652265-5652507,
5653159-5653360,5653679-5654035
Length = 511
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 348 HGLPVLMKKTQMSGDRAGSPCGLTSILPMSCRGRAVAFAR 467
HG+PVL+K + DR + G ++L R A AR
Sbjct: 91 HGVPVLLKDNMATRDRLNTTAGSLALLGSIVRRDAGVAAR 130
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -1
Query: 365 EDGKPVLQGHLQARGTHHINTQPAHASENHIHF 267
ED P+ Q H Q HH Q H +N IHF
Sbjct: 141 EDSFPLQQNHHQQYQQHHHQQQYEH--QNRIHF 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,664,907
Number of Sequences: 37544
Number of extensions: 338427
Number of successful extensions: 969
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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