Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314B12f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21128| Best HMM Match : Arg_repressor (HMM E-Value=1.9)             30   1.0  
SB_50904| Best HMM Match : NACHT (HMM E-Value=2.3e-05)                 28   4.1  
SB_14318| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_18928| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_21128| Best HMM Match : Arg_repressor (HMM E-Value=1.9)
          Length = 381

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 266 KSVCGFRRRVLVGYLCDEFPWLGDV 340
           +++ GF   V +GYL DEFP  G V
Sbjct: 314 EAIVGFEEHVFLGYLLDEFPKKGPV 338


>SB_50904| Best HMM Match : NACHT (HMM E-Value=2.3e-05)
          Length = 1122

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 210 LLNECKFMINESKTLQDNCSLGANVLNQCLLKKKGFLLSNGGGNKKV 70
           L+NE + +INES+ L +N    + VL    + K   L++N     +V
Sbjct: 423 LINESRVLINESRVLGNNSVNKSRVLVNNSVNKSRVLVNNSVNESRV 469


>SB_14318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -3

Query: 333 PSQGNSSHKYPTSTRLRKPHTLLVLAPDRVPLN--KVSVYLY*LLNECKFMI 184
           P +GN+SH++    +  +  T       R+P N  K S   Y LL+  K MI
Sbjct: 6   PRRGNTSHRFGRLRQANETPTAFHKTNSRLPTNVKKYSAIRYGLLSATKSMI 57


>SB_18928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 368 EEDADERRSRRITVRSDIDTADVLPRACRRVRAPPT 475
           + D D R  R +  R    T+DVL R C   R P T
Sbjct: 37  DRDPDSRNRRGVGSRVLARTSDVLGRVCYEERRPRT 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,665,159
Number of Sequences: 59808
Number of extensions: 384158
Number of successful extensions: 1123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)