Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314B12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53333-9|AAA96162.1|  117|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AL117202-9|CAB57892.1|  352|Caenorhabditis elegans Hypothetical ...    28   4.7  
U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam ...    27   6.2  
Z81033-1|CAB02724.1|  199|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U53333-9|AAA96162.1|  117|Caenorhabditis elegans Hypothetical
           protein F36A4.3 protein.
          Length = 117

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -2

Query: 472 RWRANATARPRQDIG-SIDVRPHGDPAR 392
           +W      R  Q +G  ID RPHG P+R
Sbjct: 83  KWSKKVNGRVGQSVGFDIDARPHGKPSR 110


>AL117202-9|CAB57892.1|  352|Caenorhabditis elegans Hypothetical
           protein Y47D3A.12 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/27 (40%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +2

Query: 62  LSPTFLFPP-PFDKRNPFFFNKH*FNT 139
           L+P  + PP  + ++NP+FFN++ F+T
Sbjct: 262 LTPPAISPPMDYTQQNPYFFNQNFFST 288


>U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam
           protein 1, isoform a protein.
          Length = 1147

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 236 LSGTRSGARTKSVCGFRRRVLVGYLCDEFPWLGDVLGARASRPHEE 373
           LS   S AR +SV   + R ++     ++ W G +L    +RP  E
Sbjct: 54  LSAGYSEARMQSVVWLKDREIISINDTDYTWKGFILTIHGTRPQNE 99


>Z81033-1|CAB02724.1|  199|Caenorhabditis elegans Hypothetical
           protein C03C11.1 protein.
          Length = 199

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 153 SLGANVLNQCLLKKKGFLLSNGGGNKKVG 67
           +L   V+ QC  KKK    SNGGG  K G
Sbjct: 23  ALAGYVIAQCGGKKKAGGSSNGGGGAKTG 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,772,444
Number of Sequences: 27780
Number of extensions: 280392
Number of successful extensions: 682
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)