Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314B11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    29   0.56 
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   3.0  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    25   5.2  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   5.2  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   6.8  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    25   9.0  
SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.0  

>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +1

Query: 418 ILDKFMKHFLFRKLKWNFRYCFKQYCEFYQVFFK 519
           + +  +K  + + +K + R+CFKQ  E+Y ++ K
Sbjct: 527 VYETALKLPVIKYVKGDNRFCFKQLLEYYDIYLK 560


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 446 KKCFINLSNIPNKLKKVVNSFCVYVKY 366
           +K  I + N+PNK+  + ++  +YV+Y
Sbjct: 485 RKIAIEMRNVPNKIHGIQSNKLMYVRY 511


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -2

Query: 430 IYPIYQINLKKLLTVFV 380
           +YP++ +NLK+ L+ F+
Sbjct: 760 VYPVFDLNLKQFLSPFI 776


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 157 ILSTCTFNLLKIMRMVYLLLKHLFV 83
           ILS    N+ ++   VY LL+HLF+
Sbjct: 263 ILSMLELNVSEVTASVYRLLRHLFL 287


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 190 WKILRESLDTRILSTCTFNLLKIMR 116
           WKIL    DTRI  T   NLL++ R
Sbjct: 579 WKILNAKDDTRI-GTTNSNLLRLKR 602


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 248 FHIKLL*KLSLVLTFFVGALEDIKRIIRYKNSVNVHI 138
           FH+ L  K  L + FF+ +L  + RI+  +  V+ +I
Sbjct: 8   FHVSLFLKRILSIAFFLLSLSTLLRIVNAQQYVDNNI 44


>SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 143

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 481 NSNENSILIYEIKNVS*IYPIYQINLKKLLTVF 383
           N++EN I + E + +     +YQ NL+KL  +F
Sbjct: 59  NNDENVINLEEFRQLKRNCDLYQRNLQKLQLLF 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,833,176
Number of Sequences: 5004
Number of extensions: 34328
Number of successful extensions: 77
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)