Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314B11f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70212-4|CAA94164.1|  322|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF101312-2|AAC69222.2|  475|Caenorhabditis elegans Hypothetical ...    28   4.7  
AF068713-7|AAC17798.2|  359|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z81487-6|CAB03996.2|  872|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z70212-4|CAA94164.1|  322|Caenorhabditis elegans Hypothetical
           protein R04D3.6 protein.
          Length = 322

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 437 FINLSNIPNKLKKVVNSFCVYV 372
           F++ S  PN L  ++ SFC++V
Sbjct: 183 FLSFSKWPNTLNLIITSFCIFV 204


>AF101312-2|AAC69222.2|  475|Caenorhabditis elegans Hypothetical
           protein F56E10.3 protein.
          Length = 475

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 430 FMKHFLFRKLKWNFRYCFKQYCEFYQV 510
           F+K  +F  L WN  Y FK +  F+ +
Sbjct: 7   FLKLAIFETLFWNLSYIFKHFQNFFGI 33


>AF068713-7|AAC17798.2|  359|Caenorhabditis elegans Hypothetical
           protein T24A6.11 protein.
          Length = 359

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 434 INLSNIPNKLKKVVNSFCVYVKYFLKQCTCTK 339
           ++LS++ NK  + + S  V VK++LK   C K
Sbjct: 322 LSLSHVVNKNIEDIQSLTVIVKFYLKTSECKK 353


>Z81487-6|CAB03996.2|  872|Caenorhabditis elegans Hypothetical
           protein C54E10.1 protein.
          Length = 872

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 42  NKTYNSKSSHKYEYTNKCFKSK*TILIIFNKLNVHVDRILVSNDSLN 182
           NKT   +   KY+Y +K   S+  + I  +  +  + + + SNDSLN
Sbjct: 631 NKTQARRHKRKYKYRSKGNHSRSLLGIHTSPTSSSMPQAIYSNDSLN 677


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,938,566
Number of Sequences: 27780
Number of extensions: 187950
Number of successful extensions: 471
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)