Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314B10f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox... 54 1e-08
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ... 31 0.14
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 26 3.9
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 25 5.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 5.2
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 25 5.2
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 25 5.2
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch... 25 6.8
SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|c... 25 6.8
>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
Etp1/ cytochrome oxidase cofactor Cox15,
fusion|Schizosaccharomyces pombe|chr 1|||Manual
Length = 631
Score = 54.0 bits (124), Expect = 1e-08
Identities = 22/38 (57%), Positives = 29/38 (76%)
Frame = +3
Query: 399 SRAVGYWLLGCSGMVFTAVVLGGVTRLTESGLSMVTWR 512
S+ V +WLLG S +V VV+GG+TRLTESGLS+ W+
Sbjct: 95 SKKVAFWLLGSSALVLAIVVVGGITRLTESGLSITEWK 132
>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 364
Score = 30.7 bits (66), Expect = 0.14
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 414 YWLLGCSGMVFTAVVLGGVTRLTESGLSMVTWRLL 518
YW G S F +G V +LT GLS +T+++L
Sbjct: 133 YWGCGLSRQAFPNQRIGSVDQLTTKGLSKLTYKVL 167
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.8 bits (54), Expect = 3.9
Identities = 18/96 (18%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Frame = +3
Query: 135 LFISIPNSCTAMLNLSRLCRCKQSLSAVQSKLLVSSRNGFSNSIISRQIITTTKMHRYNI 314
+F +P +C +++ LS++ S++ L+++ S ++ HRY++
Sbjct: 283 IFNVLPTTCKSLVVLSQVRSTAVGTSSIYYSFLLATLLSTKPSALA------ISEHRYSL 336
Query: 315 LGRFSLSSTIKSNSIIMRFCSSTPKP-KTSRAVGYW 419
+ +LSS + ++ ++TPK +++ W
Sbjct: 337 VESVTLSSLFDALHETLQLKAATPKAVHVDKSINVW 372
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 487 DSVSRVTPPSTTAVKTIPLHPSSQYPTALDVFG 389
D+ R+TP ++ V +PL + P ++V G
Sbjct: 242 DAAPRITPTKSSGVNLMPLSNAPSPPKQMNVVG 274
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 5.2
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = +3
Query: 144 SIPNSCTAMLNLSRLCRCKQSL--SAVQSKLLVSSRNGFSNSIISRQIITTTKMHRYNIL 317
S+ +S T +L+ SL S++ S L SS S+S+ S +TT +
Sbjct: 118 SLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTT-SSSLASSSTNSTTSATPTSSA 176
Query: 318 GRFSLSSTIKSNSIIMRFCSSTPKPKTSRA 407
SLSST SNS +S+ T+ A
Sbjct: 177 TSSSLSSTAASNSATSSSLASSSLNSTTSA 206
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 204 SLSAVQSKLLVSSRNGFSNSIISRQIITTTKMHRYNILGRFSLSSTIKSNSIIM 365
++SA ++ V N S ++SRQ ITT + + S +S I SI++
Sbjct: 232 AISANSNEPGVIGPNSLSRELVSRQTITTLTDYMTDSKAPHSATSLINGVSIVI 285
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -2
Query: 508 HVTIDKPDSVSRVTPPSTTAVKTIP--LHPSS 419
H++ KP+S PP+ ++ P +HPSS
Sbjct: 291 HLSAQKPNSNYYTGPPTPVSISNTPENIHPSS 322
>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +3
Query: 135 LFISIPNSCTAMLNLSRLCRCKQSLSAVQSKLLVSSRNGFSNSIISRQIITTTK 296
L SI +SC M L+ R Q + S ++ + GF+ S + +I K
Sbjct: 150 LSTSITHSCVFMFGLTLFSRLIQIPFNLYSTFVIEEKYGFNKSTLKIFVIDLLK 203
>SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 329
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -3
Query: 114 ILAALSEYFFNGLIVTYYFLLKWGQRTNRLLLKI 13
++A + +YF +G + + LK+G+ N + LK+
Sbjct: 172 LVAEVQQYFSDGSVSIHTRSLKYGKLRNGVFLKV 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,019,232
Number of Sequences: 5004
Number of extensions: 37122
Number of successful extensions: 94
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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