Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314B10f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1123 + 24474434-24474538,24474800-24474860,24475050-244754...    62   2e-10
12_02_1031 + 25537495-25537552,25538774-25538836,25538966-255392...    29   2.3  
11_06_0187 - 21029511-21029857,21031444-21031739,21032270-210323...    27   9.1  
11_04_0284 + 15770208-15770409,15770915-15771146,15771550-157717...    27   9.1  
10_02_0021 + 4283708-4284214,4285749-4286264,4286481-4286553,428...    27   9.1  
10_01_0032 + 406462-406714,407433-407664,408026-408219,408340-40...    27   9.1  
03_01_0325 + 2529875-2529922,2530181-2530279,2530958-2531055,253...    27   9.1  

>08_02_1123 +
           24474434-24474538,24474800-24474860,24475050-24475477,
           24475915-24476231,24476991-24477216,24477302-24477547,
           24477635-24477745,24478051-24478182,24478297-24478325,
           24478352-24478502
          Length = 601

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 26/47 (55%), Positives = 32/47 (68%)
 Frame = +3

Query: 381 TPKPKTSRAVGYWLLGCSGMVFTAVVLGGVTRLTESGLSMVTWRLLG 521
           T  P+  +A+G WL GC+  VF  V+LGGVTRLT SGLSM  W+  G
Sbjct: 233 TKGPQAQKAIGIWLFGCATWVFGLVILGGVTRLTRSGLSMTDWKFTG 279


>12_02_1031 +
           25537495-25537552,25538774-25538836,25538966-25539279,
           25539361-25539612,25539698-25540411
          Length = 466

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 496 DKPDSVSRVTPPSTTAVKTIPLHPSSQYPTALDVFGLGVEEQNRII 359
           DK        PP+TT+ ++ P H  S+ P  L+V   G EE  R++
Sbjct: 200 DKDKHARSPRPPTTTSRRSSPQHHRSRKP--LEVVDRGSEENVRVV 243


>11_06_0187 -
           21029511-21029857,21031444-21031739,21032270-21032345,
           21032714-21032836,21033200-21033228,21033823-21034328
          Length = 458

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 401 KSSWILATRMQWYGLHCCSTRWRHPTD 481
           K + IL TR+   G H C T   HPT+
Sbjct: 178 KGADILCTRVSNSGCHGCGTDCHHPTE 204


>11_04_0284 +
           15770208-15770409,15770915-15771146,15771550-15771743,
           15771858-15771991,15772204-15772435,15772487-15772682,
           15774964-15775002,15775969-15775987,15776131-15776274
          Length = 463

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +3

Query: 315 LGRFSLSSTIKSNSIIMRFCSSTPKPKTSRAVGYWLLGCSGMVFTAVVLGGVT 473
           L    +S+ + S SII+ F     KPK    +  W L C+G V   VV+  V+
Sbjct: 334 LRNVGISAFMNSKSIIVIF----EKPKDEMFMQKWQLACAGNVAHVVVMPHVS 382


>10_02_0021 +
           4283708-4284214,4285749-4286264,4286481-4286553,
           4287344-4287543
          Length = 431

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 296 NAQI*HPRKVQSKQHNKIKQYYNAILL 376
           +A+I H R+V  K+H K+K  +  +LL
Sbjct: 121 DAEIEHRRRVVGKEHGKVKDDFLRVLL 147


>10_01_0032 +
           406462-406714,407433-407664,408026-408219,408340-408473,
           408847-409437
          Length = 467

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = +3

Query: 240 SRNGFSNSIISRQIITTTKMHRYNILGRFSLSSTIKSNSIIMRFCSSTPKPKTSRAVGYW 419
           S+ G+   +    I      +   +L +  +S++  + S I+ F     +PK  R V  W
Sbjct: 342 SKKGYKGLLKEVHICMGNARYLEVLLKQVGISASCNTLSNIVVF----ERPKDERIVCRW 397

Query: 420 LLGCSGMVFTAVVLGGVT 473
            L C G +   VV+  VT
Sbjct: 398 QLACEGNLAHIVVMPNVT 415


>03_01_0325 +
           2529875-2529922,2530181-2530279,2530958-2531055,
           2531945-2532031,2532652-2532684,2532813-2532890,
           2533059-2533183,2533267-2533349,2533436-2533527,
           2533611-2533680,2533760-2533829,2533919-2534073
          Length = 345

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 144 SIPNSCTAMLNLSRLCRCKQSLSAVQS 224
           S P SCT +  + +  RCK+  SA  S
Sbjct: 3   SWPTSCTKVYEIIQFSRCKEEASATSS 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,474,048
Number of Sequences: 37544
Number of extensions: 216100
Number of successful extensions: 482
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)