Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314B10f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56680| Best HMM Match : PTR2 (HMM E-Value=3e-06) 31 0.44
SB_8945| Best HMM Match : ABC-3 (HMM E-Value=0.26) 31 0.44
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16) 31 0.44
SB_9604| Best HMM Match : Cbl_N3 (HMM E-Value=1.2) 31 0.76
SB_4171| Best HMM Match : Cbl_N3 (HMM E-Value=1.2) 31 0.76
SB_6707| Best HMM Match : Mucin (HMM E-Value=9.3) 30 1.3
SB_34393| Best HMM Match : RVT_1 (HMM E-Value=2e-36) 28 5.4
SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_21631| Best HMM Match : SRP19 (HMM E-Value=7.9) 27 7.1
SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30) 27 7.1
SB_11123| Best HMM Match : RVT_1 (HMM E-Value=3.4e-27) 27 7.1
SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_36806| Best HMM Match : RVT_1 (HMM E-Value=3.1e-35) 27 9.4
SB_2394| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_20303| Best HMM Match : Trans_reg_C (HMM E-Value=0.38) 27 9.4
SB_19905| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_56680| Best HMM Match : PTR2 (HMM E-Value=3e-06)
Length = 606
Score = 31.5 bits (68), Expect = 0.44
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Frame = +3
Query: 240 SRNGFSNSIISRQIITTTK-------MHRYNILGRFSLSSTIKSNSIIMRFCSSTPKPKT 398
+ NGF+N S ++ K M +Y +LG + +++ I+ C STP+ T
Sbjct: 436 TENGFTNQTTSCKVYHVVKGFNILWQMPQYALLGMSEVFASMTGLEIVYSLCPSTPQSVT 495
Query: 399 SRAVGYWLLGCSGMVFTAVVL 461
S Y ++ C G + + V +
Sbjct: 496 SAI--YNIMICIGSILSFVTM 514
>SB_8945| Best HMM Match : ABC-3 (HMM E-Value=0.26)
Length = 555
Score = 31.5 bits (68), Expect = 0.44
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 378 STPKPKTSRAVGYWLLGCSGMVFTAVVLGGVTRLTESGLSMVTW 509
S P+ ++ GYW L C + A V+ VT E+G + V++
Sbjct: 267 SKPERAAPQSPGYWALFCETWLTPAYVIAAVTLTLETGTAFVSY 310
>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
Length = 705
Score = 31.5 bits (68), Expect = 0.44
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -2
Query: 487 DSVSRVTPPSTTAVKTIPLHPSSQYPTALDVFGLGVEEQ 371
++ S P+T+AV T P++ P LD GLGVE++
Sbjct: 384 EAPSTTEVPTTSAVPTTTGAPTTAPPDCLDALGLGVEDR 422
>SB_9604| Best HMM Match : Cbl_N3 (HMM E-Value=1.2)
Length = 317
Score = 30.7 bits (66), Expect = 0.76
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = +2
Query: 260 QYYFKANYHNYKNAQI*HPRKVQSKQHNKIKQYYNAILLFNS*TEDVKSSWILATRMQWY 439
QY FK +H+ A I K+ S NK ++ + + S DV + IL T++Q+Y
Sbjct: 212 QYGFK-KHHSTALALIHLYDKLSSAIDNK--EFTMGVFIDLSKAFDVVNHEILLTKLQYY 268
Query: 440 GLHCCSTRW--RHPTDRVRFV 496
G+ S +W + ++R++FV
Sbjct: 269 GVRETSLKWFESYLSERMQFV 289
>SB_4171| Best HMM Match : Cbl_N3 (HMM E-Value=1.2)
Length = 243
Score = 30.7 bits (66), Expect = 0.76
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = +2
Query: 260 QYYFKANYHNYKNAQI*HPRKVQSKQHNKIKQYYNAILLFNS*TEDVKSSWILATRMQWY 439
QY FK +H+ A I K+ S NK ++ + + S DV + IL T++Q+Y
Sbjct: 138 QYGFK-KHHSTALALIHLYDKLSSAIDNK--EFTMGVFIDLSKAFDVVNHEILLTKLQYY 194
Query: 440 GLHCCSTRW--RHPTDRVRFV 496
G+ S +W + ++R++FV
Sbjct: 195 GVRETSLKWFDSYLSERMQFV 215
>SB_6707| Best HMM Match : Mucin (HMM E-Value=9.3)
Length = 186
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 378 STPKPKTSRAVGYWLLGCSGMVFTAVVLGGVTRLTESGLSMVTW 509
S P+ ++ GYW L C A V+ VT E+G + V++
Sbjct: 140 SKPERAAPQSPGYWALFCETWRTPAYVIAAVTLTLETGTAFVSY 183
>SB_34393| Best HMM Match : RVT_1 (HMM E-Value=2e-36)
Length = 1198
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 267 ISRQIITTTKMHRYNILGRFSLSSTIKSNSIIMRFCSSTPK 389
I+++ I H +N LG+ S TI+ FC +TP+
Sbjct: 231 INKETIVRKNPHLFNGLGKLSGEYTIRLKEGAKSFCLTTPR 271
>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = +3
Query: 282 ITTTKMHRYNILGRFSLSSTIKSNSIIMRFCSSTPKPKTSRAVGYWLLGCSGMVFTAVVL 461
+TT KM ++ L S +K S+I K R++ W LGC + + +L
Sbjct: 684 VTTEKMALFSGEVDHPLVSQLKDPSVIKSGAGDGRYSKGKRSLLTWALGCGALKLNSDLL 743
Query: 462 GGVTRLTESGLSMV 503
T + +SM+
Sbjct: 744 DLETSSKDGTISML 757
>SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1571
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 267 ISRQIITTTKMHRYNILGRFSLSSTIKSNSIIMRFCSSTPK 389
I+++ I H +N LG+ S TI+ FC +TP+
Sbjct: 402 INKETIVRKNPHLFNGLGKLSGEYTIRLKEEAKPFCLTTPR 442
>SB_21631| Best HMM Match : SRP19 (HMM E-Value=7.9)
Length = 201
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 267 ISRQIITTTKMHRYNILGRFSLSSTIKSNSIIMRFCSSTPK 389
I+++ I H +N LG+ S TI+ FC +TP+
Sbjct: 49 INKETIVRKNPHPFNGLGKLSGEYTIRLKEGAKPFCLTTPR 89
>SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30)
Length = 1191
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 267 ISRQIITTTKMHRYNILGRFSLSSTIKSNSIIMRFCSSTPK 389
I+++ I H +N LG+ S TI+ FC +TP+
Sbjct: 398 INKETIVRKNPHPFNGLGKLSGEYTIRLKEGAKPFCLTTPR 438
>SB_11123| Best HMM Match : RVT_1 (HMM E-Value=3.4e-27)
Length = 1154
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = +1
Query: 190 VDVSSL*VQCKVNSWCHLEMASVTVL---FQGKLSQLQKCT 303
++++S + +V++ C + + S L ++GKL QLQKCT
Sbjct: 128 IEINSRPLCFEVDTGCPVTLISEETLNSVYEGKLPQLQKCT 168
>SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1017
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 267 ISRQIITTTKMHRYNILGRFSLSSTIKSNSIIMRFCSSTPK 389
I+++ I H +N LG+ S TI+ FC +TP+
Sbjct: 395 INKETIVRKNPHLFNGLGKLSGEYTIRLKEGAKPFCLTTPR 435
>SB_36806| Best HMM Match : RVT_1 (HMM E-Value=3.1e-35)
Length = 380
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 270 SRQIITTTKMHRYNILGRFSLSSTIKSNSIIMRFCSSTPK 389
+R+ I H +N LG+ S TI+ FC +TP+
Sbjct: 62 NRETIVRKNPHLFNGLGKLSGEYTIRLKEGAKPFCLTTPR 101
>SB_2394| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 590
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 181 HDFVDVSSL*VQCKVNSWCHL 243
HDF SS+ V VN WC++
Sbjct: 361 HDFFQPSSMGVSYTVNQWCNI 381
>SB_20303| Best HMM Match : Trans_reg_C (HMM E-Value=0.38)
Length = 1354
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 136 YSSVYLTVVQLC*TSHDFVDVSSL*VQCKVNSWCHLEMASVTVLFQG 276
Y SV +++ +L +HD + SS V V WC + T+ +G
Sbjct: 1303 YLSVPVSLTELLHWNHDTLSFSSSVVALAVERWCSDDRVKQTIAAKG 1349
>SB_19905| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 267 ISRQIITTTKMHRYNILGRFSLSSTIKSNSIIMRFCSSTPK 389
I+++ I H +N LG+ S TI+ FC +TP+
Sbjct: 395 INKETIVRKNPHIFNGLGKLSGEYTIRLKEGAKPFCLTTPR 435
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,924,275
Number of Sequences: 59808
Number of extensions: 273247
Number of successful extensions: 854
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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