Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314B10f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49130-3|CAA88968.1| 395|Caenorhabditis elegans Hypothetical pr... 66 2e-11
U80031-6|AAB37618.2| 491|Caenorhabditis elegans Hypothetical pr... 31 0.66
Z73899-9|CAA98072.2| 905|Caenorhabditis elegans Hypothetical pr... 30 0.87
Z11576-1|CAA77663.1| 625|Caenorhabditis elegans aromatic-L-amin... 30 0.87
Z68334-2|CAA92728.2| 797|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z54216-10|CAA90949.2| 797|Caenorhabditis elegans Hypothetical p... 28 3.5
AF173174-1|AAF13167.1| 796|Caenorhabditis elegans CLC chloride ... 28 3.5
AB035090-1|BAA86959.1| 797|Caenorhabditis elegans clc chloride ... 28 3.5
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor... 28 4.7
U00056-1|AAN65308.2| 476|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr... 27 8.1
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein... 27 8.1
>Z49130-3|CAA88968.1| 395|Caenorhabditis elegans Hypothetical
protein T06D8.5 protein.
Length = 395
Score = 65.7 bits (153), Expect = 2e-11
Identities = 27/41 (65%), Positives = 34/41 (82%)
Frame = +3
Query: 393 KTSRAVGYWLLGCSGMVFTAVVLGGVTRLTESGLSMVTWRL 515
K+ + +G+WL+GC+GM + AV LGGVTRLTESGLSMV W L
Sbjct: 46 KSRKRIGWWLMGCAGMCYGAVALGGVTRLTESGLSMVNWDL 86
>U80031-6|AAB37618.2| 491|Caenorhabditis elegans Hypothetical
protein B0554.7 protein.
Length = 491
Score = 30.7 bits (66), Expect = 0.66
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 378 STPKPKTSRAVGYWLLGCSGMVFTAVVLGGVTRLTE 485
ST + S W +GC ++ A++LGG+T ++E
Sbjct: 133 STRRSIESNVSLQWAIGCGSLILGAMILGGMTWISE 168
>Z73899-9|CAA98072.2| 905|Caenorhabditis elegans Hypothetical
protein ZK829.2 protein.
Length = 905
Score = 30.3 bits (65), Expect = 0.87
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 270 SRQIITTTKMHRYNILGRFSLSSTIKSNSIIMRFCSSTPK 389
S + ++R N G SL+S + N ++R C ++PK
Sbjct: 747 SNDMFNKALLYRCNETGNVSLASCVLQNKFVIRMCINSPK 786
>Z11576-1|CAA77663.1| 625|Caenorhabditis elegans aromatic-L-amino
acid decarboxylaseprotein.
Length = 625
Score = 30.3 bits (65), Expect = 0.87
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 270 SRQIITTTKMHRYNILGRFSLSSTIKSNSIIMRFCSSTPK 389
S + ++R N G SL+S + N ++R C ++PK
Sbjct: 467 SNDMFNKALLYRCNETGNVSLASCVLQNKFVIRMCINSPK 506
>Z68334-2|CAA92728.2| 797|Caenorhabditis elegans Hypothetical
protein C07H4.2 protein.
Length = 797
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 426 GCSGMVFTAVVLGGVTRLTESGLSMVTWRLLG 521
G MV A VLGGVTR+T S L ++ + L G
Sbjct: 544 GLYAMVGAAAVLGGVTRMTVS-LVVIMFELTG 574
>Z54216-10|CAA90949.2| 797|Caenorhabditis elegans Hypothetical
protein C07H4.2 protein.
Length = 797
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 426 GCSGMVFTAVVLGGVTRLTESGLSMVTWRLLG 521
G MV A VLGGVTR+T S L ++ + L G
Sbjct: 544 GLYAMVGAAAVLGGVTRMTVS-LVVIMFELTG 574
>AF173174-1|AAF13167.1| 796|Caenorhabditis elegans CLC chloride
channel protein protein.
Length = 796
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 426 GCSGMVFTAVVLGGVTRLTESGLSMVTWRLLG 521
G MV A VLGGVTR+T S L ++ + L G
Sbjct: 544 GLYAMVGAAAVLGGVTRMTVS-LVVIMFELTG 574
>AB035090-1|BAA86959.1| 797|Caenorhabditis elegans clc chloride
channel homologue protein.
Length = 797
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 426 GCSGMVFTAVVLGGVTRLTESGLSMVTWRLLG 521
G MV A VLGGVTR+T S L ++ + L G
Sbjct: 544 GLYAMVGAAAVLGGVTRMTVS-LVVIMFELTG 574
>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform h protein.
Length = 2006
Score = 27.9 bits (59), Expect = 4.7
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Frame = +3
Query: 210 SAVQSKLLVSSRNGFSNSIISRQIITTTKMHRYNILGRFSLSSTIKSN-SIIMRFCSSTP 386
S + K + GF N I ++ TTK R + F + N S + S T
Sbjct: 737 SELPEKFPPAHEQGFVNFAIKSEVTATTKFDRLKYMAEFRKLLALPDNFSTTPKQSSPTS 796
Query: 387 KPKTSR 404
P T+R
Sbjct: 797 SPTTTR 802
>U00056-1|AAN65308.2| 476|Caenorhabditis elegans Hypothetical
protein R05H11.1 protein.
Length = 476
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 263 YYFKAN-YHNYKNAQI*HPRKVQSKQHNKIKQ-YYNAIL 373
YY K++ + NY + HP++V+S Q + I Q Y N +L
Sbjct: 107 YYLKSSKFQNYMFCKRSHPKEVKSLQPSTIPQNYINGML 145
>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical
protein C10C6.1 protein.
Length = 1565
Score = 27.1 bits (57), Expect = 8.1
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +3
Query: 174 NLSRLCRCKQSLSAVQSKLLVSSRNGFSNSIISRQIITTTKMHRYNILGRFSLSSTIKS 350
+++ LCR + SL +L SS N F+ S S T + L FS SS +S
Sbjct: 60 SMTNLCRVRSSLGHSDPQLSSSSTNSFNTSTSSLHPATKSST---TALSSFSTSSANRS 115
>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
protein.
Length = 1565
Score = 27.1 bits (57), Expect = 8.1
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +3
Query: 174 NLSRLCRCKQSLSAVQSKLLVSSRNGFSNSIISRQIITTTKMHRYNILGRFSLSSTIKS 350
+++ LCR + SL +L SS N F+ S S T + L FS SS +S
Sbjct: 60 SMTNLCRVRSSLGHSDPQLSSSSTNSFNTSTSSLHPATKSST---TALSSFSTSSANRS 115
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,111,726
Number of Sequences: 27780
Number of extensions: 205482
Number of successful extensions: 520
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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