Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314B10f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    26   0.27 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.62 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   0.82 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   3.3  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   4.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   5.8  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   5.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.8  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 375 SSTPKPKTSRAVGYWLLGCSGMVFTAVV 458
           +S PK    +A   W LGC+  +F A+V
Sbjct: 283 NSLPKVSYIKASEIWFLGCTIFLFAAMV 310


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 420 LLGCSGMVFTAVVLGGVTRLTESGLSM 500
           L+ CSG+VF  +++ GV  + +   +M
Sbjct: 769 LIICSGLVFVQILINGVWMIIDPAKAM 795


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 375 SSTPKPKTSRAVGYWLLGC 431
           S+ P+P  + A+G+W + C
Sbjct: 371 SAIPEPSKNPAMGHWQMSC 389



 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 427 PSSQYPTALDVF 392
           P   YPTALD F
Sbjct: 268 PKVPYPTALDFF 279


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 375 SSTPKPKTSRAVGYWLLGCSGMVFTAV 455
           S  P     +A+  W+ GC   VF A+
Sbjct: 251 SDIPPVAYVKALDVWMAGCMMFVFAAL 277


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 113 IYQHA*DSIHQYT*QLYSY 169
           +YQ+A DS H+ T   + Y
Sbjct: 213 VYQNADDSFHRLTSNTFDY 231


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +3

Query: 405 AVGYWLLGCSGMVFTAVVLGGVTRLTESG 491
           AV   +  C G+ FTA    G    TE G
Sbjct: 277 AVSGMVFDCGGLEFTAAPFNGWYMSTEIG 305


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 113 IYQHA*DSIHQYT*QLYSYAEPLTTLSM 196
           +YQ++ DS H+ T   + Y    T L++
Sbjct: 218 MYQNSDDSFHRLTSNTFDYDPRYTKLTV 245


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 378 STPKPKTSRAVGYWLLGCSGMVFTAVV 458
           S P     +A+  W+  CS  VF +++
Sbjct: 266 SLPPVSYVKAIDVWMSSCSVFVFLSLM 292


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 306 YNILGRFSLSSTIKSNSIIMRFCSSTPKPKTSRAVGYWLLGC 431
           Y ++G    SS    ++      S++P+P +S A    L GC
Sbjct: 816 YLMVGNSPASSPRYLSAAATSSTSTSPRPASSTAATLVLSGC 857


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,966
Number of Sequences: 438
Number of extensions: 2526
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)