Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314B10f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56090.1 68418.m06998 cytochrome oxidase assembly family prot...    58   3e-09
At4g18640.1 68417.m02759 leucine-rich repeat transmembrane prote...    28   4.4  
At4g16442.1 68417.m02489 integral membrane family protein contai...    27   7.7  

>At5g56090.1 68418.m06998 cytochrome oxidase assembly family protein
           contains PF02628: Cytochrome oxidase assembly protein
          Length = 457

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 31/67 (46%), Positives = 38/67 (56%)
 Frame = +3

Query: 321 RFSLSSTIKSNSIIMRFCSSTPKPKTSRAVGYWLLGCSGMVFTAVVLGGVTRLTESGLSM 500
           R S  ++I S S        T  P+  + VG WL G +  VF+ VVLGGVTRLT SGLSM
Sbjct: 70  RMSTVASISSESKEGLKLLVTGGPQAQKWVGIWLFGSAAWVFSMVVLGGVTRLTRSGLSM 129

Query: 501 VTWRLLG 521
             W+  G
Sbjct: 130 TDWKFTG 136


>At4g18640.1 68417.m02759 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 686

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -2

Query: 253 KPFRDDTRSLLCTALRDCLHRQSRERFSI 167
           K F+++   ++C  +R+CL  + R+R S+
Sbjct: 620 KTFKEEELEVICDVIRECLKTEQRQRPSM 648


>At4g16442.1 68417.m02489 integral membrane family protein contains
           TIGRFAM TIGR01569 : plant integral membrane protein
           TIGR01569; contains Pfam PF04535 : Domain of unknown
           function (DUF588)
          Length = 182

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 111 KYTSMPKILFISIPNSCTAMLNLSRLCRCKQSLSAVQSKLLVS 239
           KYT M  ++F+ + N   A+ +L +  RC   +  ++ K+L S
Sbjct: 47  KYTDMKAVVFLVVANGIAAVYSLLQSVRC--VVGTMKGKVLFS 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,311,900
Number of Sequences: 28952
Number of extensions: 184617
Number of successful extensions: 494
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)