Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314B07f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 33 0.12
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 32 0.27
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 32 0.27
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 30 0.82
At3g61260.1 68416.m06856 DNA-binding family protein / remorin fa... 30 1.1
At3g25950.1 68416.m03234 hypothetical protein 29 1.9
At4g08013.1 68417.m01283 hypothetical protein low similarity to ... 29 2.5
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 29 2.5
At2g27660.1 68415.m03352 DC1 domain-containing protein contains ... 29 2.5
At4g01090.1 68417.m00147 extra-large G-protein-related contains ... 28 3.3
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 28 3.3
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 28 3.3
At5g66850.1 68418.m08428 protein kinase family protein contains ... 27 5.8
At4g13700.1 68417.m02128 serine/threonine protein phosphatase fa... 27 5.8
At4g33910.1 68417.m04812 oxidoreductase, 2OG-Fe(II) oxygenase fa... 27 7.7
At4g15730.1 68417.m02394 expressed protein 27 7.7
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf... 27 7.7
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf... 27 7.7
At3g10070.1 68416.m01207 transcription initiation factor IID (TF... 27 7.7
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 33.1 bits (72), Expect = 0.12
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +2
Query: 239 SSGY--TAPDGTPIQITYIADANGYQP-SGAHLPTTPAPVPI-PDYIARAIEYIRTHP 400
S GY T+P +P TY + GY P S A+ PT+P+ P P Y + Y T P
Sbjct: 1563 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1620
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 31.9 bits (69), Expect = 0.27
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 215 DASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAPVPIPDYIA 370
D S + + +P P+ + + A G+ P GAH P P P P+P +A
Sbjct: 201 DHSCRLPNDARAPSPVNNPL-LGSLPKAEGFPPLGAHGPFQPTPSPVPTPLA 251
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 31.9 bits (69), Expect = 0.27
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 215 DASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAPVPIPDYIA 370
D S + + +P P+ + + A G+ P GAH P P P P+P +A
Sbjct: 201 DHSCRLPNDARAPSPVNNPL-LGSLPKAEGFPPLGAHGPFQPTPSPVPTPLA 251
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 30.3 bits (65), Expect = 0.82
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 330 PLPQPLSQSQITSPGPSSTSELTHPSQR 413
P PQPL+Q +T+P P S++ H ++
Sbjct: 467 PQPQPLNQLALTNPQPQSSNHSIHQQEK 494
>At3g61260.1 68416.m06856 DNA-binding family protein / remorin
family protein similar to DNA-binding protein gi|601843
[Arabidopsis thaliana], remorin [Solanum tuberosum]
GI:1881585; contains Pfam profiles PF03763: Remorin
C-terminal region, PF03766: Remorin N-terminal region
Length = 212
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 266 TPIQITYIADANGYQPSGAHLPTTPAPVPIPDYIARAIEYIRTHPPKPE 412
+P ++T A A+ P+ A +P PAP P P + + + + P PE
Sbjct: 13 SPAKVTTPAPADTPAPAPAEIPA-PAPAPTPADVTKDVAEEKIQNPPPE 60
>At3g25950.1 68416.m03234 hypothetical protein
Length = 251
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = -3
Query: 408 GLGG*VLMYSMARAM*SGIGTGAGVVGRWAPEGW 307
GL G V++Y MA G G GVV RWA W
Sbjct: 187 GLAGPVVLYDMATFY--GSGAADGVVPRWAWLSW 218
>At4g08013.1 68417.m01283 hypothetical protein low similarity to
SCARECROW [Zea mays] GI:10178637
Length = 113
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 330 PLPQPLSQSQITSPGPSSTSELTHPSQRSAN 422
P PL+Q Q SP P+S + THPS + N
Sbjct: 69 PPEAPLNQEQSESPNPNSQA-YTHPSSQGNN 98
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 330 PLPQPLSQSQITSPGPSSTSELTHPSQRSA 419
P P P S+ ++ +P PSS E+ P Q A
Sbjct: 877 PAPSPDSEPEVEAPVPSSEPEVEAPKQSEA 906
>At2g27660.1 68415.m03352 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 718
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Frame = +1
Query: 334 YPSPCPNPRLHRPGHRVHQNS---PTQARGR 417
+ + PNP H GH HQNS P Q R
Sbjct: 185 HSTSAPNPHTHHAGHPQHQNSLPVPNQGSNR 215
>At4g01090.1 68417.m00147 extra-large G-protein-related contains
weak similarity to extra-large G-protein [Arabidopsis
thaliana] gi|3201682|gb|AAC19353
Length = 714
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 337 PSPCPNPRLHRPGHRVHQNSPTQARGRPTYLSYMIVDKDDY 459
P P PNP + PGH +Q + G+ L IV+ Y
Sbjct: 163 PPPVPNPNWYPPGHYPNQMARQYPGGQYVELGPDIVEPHSY 203
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 287 IADANGYQPSGAHLPTTPAPVPIPDYIA 370
I A G+ P GAH P P P+P +A
Sbjct: 224 IPKAGGFPPLGAHGPFQPTASPVPTPLA 251
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 287 IADANGYQPSGAHLPTTPAPVPIPDYIA 370
I A G+ P GAH P P P+P +A
Sbjct: 224 IPKAGGFPPLGAHGPFQPTASPVPTPLA 251
>At5g66850.1 68418.m08428 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain; identical
to cDNA MAP3K gamma protein kinase GI:2315152
Length = 716
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 304 IPAFGCPSAHYPSPCPNPRLHRPGH 378
IP P++ Y SP P+P+ GH
Sbjct: 181 IPTMSAPTSPYMSPVPSPQRKSTGH 205
>At4g13700.1 68417.m02128 serine/threonine protein phosphatase
family protein contains Pfam domain PF00149: Ser/Thr
protein phosphatase
Length = 474
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 451 PYQLSYNLNTLADLWLGWVSSDVLDG 374
P Q++ L+T +W+ WV+ D + G
Sbjct: 65 PEQIALALSTPTSMWVSWVTGDAIVG 90
>At4g33910.1 68417.m04812 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to prolyl 4-hydroxylase, alpha
subunit, from Gallus gallus [GI:212530], Rattus
norvegicus [GI:474940], Drosophila melanogaster
[GI:4336512]; contains PF03171 2OG-Fe(II) oxygenase
superfamily domain
Length = 288
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = -2
Query: 130 ENVSILRHNLGISFASAHDVRNVSDGYRDQSEEDVSS 20
E+ +ILR+ LG + S +DV N ++ Y QS + ++S
Sbjct: 166 ESFNILRYELGQKYDSHYDVFNPTE-YGPQSSQRIAS 201
>At4g15730.1 68417.m02394 expressed protein
Length = 1059
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = +2
Query: 152 YQTSNGISGQEQGALVNEGREDASIAVQGSS---GYTAPDGTPIQITYIADANGYQPSGA 322
Y+ + ++ +L N + S ++ G + + +P T ++ D YQ SG+
Sbjct: 67 YKRLPAVPSCQRSSLGNHAVQRISNSLPGKNVVQKFQSPPATSCKLVRNQDPQNYQTSGS 126
Query: 323 HLPTTPAPVPI 355
L P VPI
Sbjct: 127 LLAQAPGKVPI 137
>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1135
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 287 IADANGYQPSGAHLPTTPAPVPIPDYIA 370
+ G+ P GAH P P P P+ +A
Sbjct: 224 VPKVGGFPPLGAHGPFQPTPAPLTTSLA 251
>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1137
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 287 IADANGYQPSGAHLPTTPAPVPIPDYIA 370
+ G+ P GAH P P P P+ +A
Sbjct: 224 VPKVGGFPPLGAHGPFQPTPAPLTTSLA 251
>At3g10070.1 68416.m01207 transcription initiation factor IID
(TFIID) subunit A family protein similar to hypothetical
protein GB:CAB10099 [Schizosaccharomyces pombe];
contains Pfam profile PF03847: Transcription initiation
factor TFIID subunit A
Length = 539
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 310 AFGCPSAHYPSPCPNPRLHRP 372
A G P++ PSP P P H P
Sbjct: 140 AIGVPASPIPSPSPTPSQHSP 160
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,403,908
Number of Sequences: 28952
Number of extensions: 307101
Number of successful extensions: 1354
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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