Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314B06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c...    27   1.3  
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    27   1.3  
SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces p...    26   3.9  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   6.8  
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           25   9.0  

>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -1

Query: 464 PDPSLYGRGPSTKNASDHTFLF 399
           P+P+L    P+T+ AS++T+L+
Sbjct: 174 PEPALLPEAPNTREASNNTYLY 195


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 374 HREGGV*FQIGTYGRKHFLLTDLVHKDLGL 463
           ++E G+  ++G+YG  ++  T  VH +LG+
Sbjct: 470 YKESGIGRELGSYGLTNYTQTKAVHINLGM 499


>SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 461 LVFDSITAIVGTGFNGRGD 517
           LV DS TA+  T F+GRG+
Sbjct: 241 LVVDSCTALYRTDFSGRGE 259


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = -1

Query: 452 LYGRGPST----KNASDHTFLFETIHHPPDGETSCIHVCC 345
           LY +G  T    + ASD+ +L  TIHH  D  T  +   C
Sbjct: 674 LYVKGADTVIMERLASDNPYLQTTIHHLEDYATVGLRTLC 713


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 454 VFMDEVRQQKMLPTIRSYL 398
           +F +E+R Q +LPT+ SY+
Sbjct: 449 IFNEELRIQTLLPTMLSYM 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,751
Number of Sequences: 5004
Number of extensions: 40087
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)