Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314B06f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1938| Best HMM Match : No HMM Matches (HMM E-Value=.)              122   2e-28
SB_1048| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.0  
SB_23544| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_59015| Best HMM Match : Arif-1 (HMM E-Value=0.62)                   29   1.8  
SB_31029| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_23712| Best HMM Match : HSBP1 (HMM E-Value=0.35)                    27   7.1  
SB_38103| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_2200| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  

>SB_1938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score =  122 bits (294), Expect = 2e-28
 Identities = 65/120 (54%), Positives = 81/120 (67%)
 Frame = -2

Query: 463 QTQVFMDEVRQQKMLPTIRSYLKLYTTLPMAKLAAFMSAARGSERDAAREHAALAIHLLC 284
           Q +VFM+EV QQ M+P IRSYLKLYTT+P+AKLAAF+                  +H   
Sbjct: 143 QLKVFMNEVAQQSMIPVIRSYLKLYTTMPIAKLAAFLD-----------------MH--- 182

Query: 283 FKXKMKNVVWTKGPSGLDGKFQSGXELDXYIDNDMIHIADTKVAHRYGDFFIRKLLKFEE 104
              K +N+VWTKG  GLDG+ QS  E+D YID DMIHIADTKV  RYG+FF+R++ KF+E
Sbjct: 183 ---KQRNLVWTKGTDGLDGEQQSSSEVDFYIDRDMIHIADTKVDRRYGEFFMRQIYKFDE 239


>SB_1048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 599

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 508 PIEPGANYGRDAVKHQTQVFMDEVRQQKMLPTIRSYLKLYTT 383
           P +P   YG+  ++ ++   + +V Q K +P  R   K YTT
Sbjct: 46  PSDPDLYYGQGTLREKSTFRLPDVNQTKQMPCPRPMPKTYTT 87


>SB_23544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 508 PIEPGANYGRDAVKHQTQVFMDEVRQQKMLPTIRSYLKLYTT 383
           P +P   YG+  ++ ++   + +V Q K +P  R   K YTT
Sbjct: 20  PSDPDLYYGQGTLREKSTFRLPDVNQTKQMPCPRPMPKTYTT 61


>SB_59015| Best HMM Match : Arif-1 (HMM E-Value=0.62)
          Length = 526

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 413 HTFLFETIHHPPDGETSCIHVCCSR 339
           H  L+ TIHH P G  +   +C SR
Sbjct: 251 HVRLYNTIHHRPTGNAAQTMICASR 275


>SB_31029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 843

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -1

Query: 443 RGPSTKNASDHTFLFETIHHPPDGETSCIHVCCSRQ 336
           RG       D  FL+ T+H P    TS I  C S Q
Sbjct: 192 RGKVWTLKQDAEFLYYTVHDPVPAVTSSIKPCSSEQ 227


>SB_23712| Best HMM Match : HSBP1 (HMM E-Value=0.35)
          Length = 437

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = -2

Query: 232 DGKFQSGXELDXYIDNDMIHIADTKVAHRYGDFFIRKLLKFEELNRKLXHI 80
           D  F S    D Y ++    + ++K   R  D++ +KL +++   +K   I
Sbjct: 286 DANFYSSFSCDYYTEDQFNELVNSKTEKRKRDYYDKKLSEYKSNVKKTWRI 336


>SB_38103| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 498 PVPTMAVMLSNTRPKSLWTRSVNKKCFRPYVPI*NYTPPSR 376
           P PT   ++ N +P S  T     + +RPY P   YTP  R
Sbjct: 319 PPPTNPQLVVNDQPSSPQTEPSTSEGYRPYQPY-YYTPGLR 358


>SB_2200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -2

Query: 472 VKHQTQVFMDEVRQQKMLPTIRSYLKLYTTLPMAKLAAFMS 350
           VK   + FM+ V +   L T+R YL+ Y+ + + K  +++S
Sbjct: 33  VKKMFETFMEAVYKIN-LHTLRGYLRFYSQMMLCKFRSYIS 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,858,070
Number of Sequences: 59808
Number of extensions: 323772
Number of successful extensions: 666
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)