Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314B06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28739-15|AAK68188.1|  537|Caenorhabditis elegans Hypothetical p...    95   4e-20
U28739-14|AAM54207.1|  535|Caenorhabditis elegans Hypothetical p...    95   4e-20
U80446-4|AAB37804.1|  443|Caenorhabditis elegans Hypothetical pr...    30   1.2  

>U28739-15|AAK68188.1|  537|Caenorhabditis elegans Hypothetical
           protein C17G10.9a protein.
          Length = 537

 Score = 94.7 bits (225), Expect = 4e-20
 Identities = 56/142 (39%), Positives = 77/142 (54%), Gaps = 1/142 (0%)
 Frame = -2

Query: 496 GANYGRDAVKHQTQVFMDEVRQQKMLPTIRSYLKLYTTLPMAKLAAFMSAARGSERDAAR 317
           G N  ++ +  QTQ F++ +  Q  LP +R YLKLYTTLP  KLA+FM        D   
Sbjct: 402 GVNQSKEPLLRQTQSFLEGIESQMALPVLRGYLKLYTTLPTKKLASFM--------DVDD 453

Query: 316 EHAALAI-HLLCFKXKMKNVVWTKGPSGLDGKFQSGXELDXYIDNDMIHIADTKVAHRYG 140
           EH    I  LL +K  +  +    GPS  D   +   ++D Y+D DMI+IADTKVA   G
Sbjct: 454 EHYDSFIGKLLTYKMIVNELGKEAGPSSADDD-EPQTDIDFYVDRDMINIADTKVARHVG 512

Query: 139 DFFIRKLLKFEELNRKLXHIKI 74
           + FIR + K +E+   L  + I
Sbjct: 513 EHFIRHIQKLQEVQDVLKRLDI 534


>U28739-14|AAM54207.1|  535|Caenorhabditis elegans Hypothetical
           protein C17G10.9b protein.
          Length = 535

 Score = 94.7 bits (225), Expect = 4e-20
 Identities = 56/142 (39%), Positives = 77/142 (54%), Gaps = 1/142 (0%)
 Frame = -2

Query: 496 GANYGRDAVKHQTQVFMDEVRQQKMLPTIRSYLKLYTTLPMAKLAAFMSAARGSERDAAR 317
           G N  ++ +  QTQ F++ +  Q  LP +R YLKLYTTLP  KLA+FM        D   
Sbjct: 400 GVNQSKEPLLRQTQSFLEGIESQMALPVLRGYLKLYTTLPTKKLASFM--------DVDD 451

Query: 316 EHAALAI-HLLCFKXKMKNVVWTKGPSGLDGKFQSGXELDXYIDNDMIHIADTKVAHRYG 140
           EH    I  LL +K  +  +    GPS  D   +   ++D Y+D DMI+IADTKVA   G
Sbjct: 452 EHYDSFIGKLLTYKMIVNELGKEAGPSSADDD-EPQTDIDFYVDRDMINIADTKVARHVG 510

Query: 139 DFFIRKLLKFEELNRKLXHIKI 74
           + FIR + K +E+   L  + I
Sbjct: 511 EHFIRHIQKLQEVQDVLKRLDI 532


>U80446-4|AAB37804.1|  443|Caenorhabditis elegans Hypothetical
           protein F56A3.2 protein.
          Length = 443

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 513 PRPLNPVPTMAVMLSNTRPKSLWTRSVNKKCFRPYVPI*NYTPPSR 376
           P  +   P ++    +  PKS+  RSV+  CF P V   N  P ++
Sbjct: 63  PLTIPSTPALSGKFDSKTPKSVRRRSVSMSCFTPIVETINQPPTNQ 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,705,333
Number of Sequences: 27780
Number of extensions: 242546
Number of successful extensions: 546
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)