Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314B05f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...   118   2e-27
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)           118   3e-27
At2g34240.1 68415.m04189 hypothetical protein contains Pfam prof...    29   2.5  
At5g15680.1 68418.m01834 expressed protein                             28   3.3  
At5g15920.1 68418.m01862 structural maintenance of chromosomes (...    28   4.4  
At3g09210.1 68416.m01095 KOW domain-containing transcription fac...    27   5.8  

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score =  118 bits (284), Expect = 2e-27
 Identities = 51/77 (66%), Positives = 63/77 (81%)
 Frame = +2

Query: 158 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 337
           NPLFE+RPK F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLD
Sbjct: 20  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 79

Query: 338 KTTAKGLFKILEKYRPE 388
           K  A  LFKIL KYRPE
Sbjct: 80  KNLATSLFKILLKYRPE 96


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score =  118 bits (283), Expect = 3e-27
 Identities = 50/77 (64%), Positives = 63/77 (81%)
 Frame = +2

Query: 158 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 337
           NPLFE+RPK F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLD
Sbjct: 21  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 80

Query: 338 KTTAKGLFKILEKYRPE 388
           K  A  LFK+L KYRPE
Sbjct: 81  KNLATSLFKVLLKYRPE 97


>At2g34240.1 68415.m04189 hypothetical protein contains Pfam
           profiles PF04780: Protein of unknown function (DUF629),
           PF04781: Protein of unknown function (DUF627)
          Length = 712

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 160 SSLREEAKELCHWSGHSANSGLVQICKMAQVYPHPAPEG 276
           S+L  + + LC    H  ++G V+  K + +Y H  PEG
Sbjct: 451 SNLLLDGRLLCEEEHHFDDTGSVETFKSSGIYEHVIPEG 489


>At5g15680.1 68418.m01834 expressed protein 
          Length = 2151

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
 Frame = +1

Query: 118  PIGGQKG*AQEDRESSLRE---EAKELCHWSGHSANSGLVQICKMAQVYPHPAPEGCTSA 288
            P+ G  G     ++SS  E   + K L   +   A SG +Q   MA     P P G  +A
Sbjct: 2048 PVQGGTG-GSHPQDSSYSENGTDEKTLVPQTSFKARSGPLQYAMMAATMSQPFPLGAAAA 2106

Query: 289  SSESAPSD 312
             S   P D
Sbjct: 2107 ESGIPPRD 2114


>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
            family protein (MSS2) similar to SMC-related protein MSS2
            [Arabidopsis thaliana] GI:9965743; contains Pfam profiles
            PF02483: SMC family C-terminal domain, PF02463:
            RecF/RecN/SMC N terminal domain
          Length = 1053

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 415  QPLFPGCFSLRPVFLQNLEKALSCSLVQCL 326
            QP  P CF L P  L  LE + +CS++  +
Sbjct: 992  QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021


>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
           family protein ; est match
          Length = 333

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 445 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 350
           L N S S  P+P+FPGC  +R +  + +  ++
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,212,008
Number of Sequences: 28952
Number of extensions: 195394
Number of successful extensions: 640
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)