Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314B04f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 116 2e-27
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 30 0.24
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 30 0.24
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 29 0.56
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 28 0.73
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 28 0.97
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 1.3
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 27 1.3
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 27 1.7
SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces ... 27 2.2
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 27 2.2
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 26 3.9
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 26 3.9
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 3.9
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 25 5.2
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 25 5.2
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 25 6.8
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 25 6.8
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe... 25 6.8
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 6.8
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 25 9.0
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 25 9.0
SPAC1782.05 |||phosphotyrosyl phosphatase activator homolog|Schi... 25 9.0
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 116 bits (279), Expect = 2e-27
Identities = 64/140 (45%), Positives = 92/140 (65%), Gaps = 1/140 (0%)
Frame = +3
Query: 99 MAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPG 278
M+ + ++I GIRSF ++ + I F SPLTLI+GQNG GKTTIIECL+YA TG +PP
Sbjct: 1 MSCIDRMSIMGIRSF--DNRSRESIQFFSPLTLIVGQNGSGKTTIIECLKYATTGILPPN 58
Query: 279 SRNECFVHDAKVNRSTEVLGQVKLKIVNAKDKQLEVTRSMKVTALAKKKTKFQ-TLDSFL 455
++ F+HD K+ EVL QVKL N ++ TRS++++ KK T+ Q TLD L
Sbjct: 59 TKGGAFIHDPKICGEKEVLAQVKLAFRNTNQVKMICTRSLQLS--VKKTTRQQKTLDGQL 116
Query: 456 STVDESGKTKDVSSRCADLD 515
+ ++ +T +S+RCA+LD
Sbjct: 117 LILKDNERT-TISNRCAELD 135
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 29.9 bits (64), Expect = 0.24
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 10/119 (8%)
Frame = +3
Query: 186 PLTLILGQNGCGKTTIIECLRYAITGQMPPGSRNECFVHDAK----VNRSTEVLGQVKLK 353
P +I G G GKTT I CL +A+ G E D + V + Q K+
Sbjct: 55 PHLVISGMPGIGKTTSILCLAHALLGPAYKEGVLELNASDERGIDVVRNRIKAFAQKKVI 114
Query: 354 IVNAKDKQLEVTRSMKVTALAKKKTK-----FQTLDSFLSTVDESGK-TKDVSSRCADL 512
+ + K + + + +TA A++ + + F ++S K + + SRCA L
Sbjct: 115 LPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAIL 173
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 29.9 bits (64), Expect = 0.24
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 198 ILGQNGCGKTTIIECL-RYAITGQMPPGSRNECFV 299
++G NGCGK+T++ + Y + P CFV
Sbjct: 475 VVGHNGCGKSTLLRAIGDYKVENFPSPDEVKTCFV 509
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 198 ILGQNGCGKTTIIECL 245
ILG NG GK+T+I+ L
Sbjct: 724 ILGPNGAGKSTLIKVL 739
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 28.7 bits (61), Expect = 0.56
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +3
Query: 174 LFDSP-LTLILGQNGCGKTTIIECL 245
LF P L LI+G NG GK+TI+ +
Sbjct: 29 LFPGPYLNLIIGPNGTGKSTIVSAI 53
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 28.3 bits (60), Expect = 0.73
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 189 LTLILGQNGCGKTTIIECLRY 251
+T++LG GCGKTT I Y
Sbjct: 43 ITIVLGHTGCGKTTQIPQFLY 63
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 27.9 bits (59), Expect = 0.97
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 180 DSPLTLILGQNGCGKTTIIECL 245
+S L LI G +GCGK+T ++ L
Sbjct: 104 ESRLLLICGPSGCGKSTAVQVL 125
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 168 RILFDSPLTLILGQNGCGKTTIIECL 245
R L L++G GCGKTT+ + L
Sbjct: 1181 RCLLAKEPVLLVGDTGCGKTTVCQIL 1206
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 27.5 bits (58), Expect = 1.3
Identities = 23/107 (21%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Frame = +3
Query: 165 QRILFDSPLTLILGQNGCGKTTIIECLRY-----AITGQMPPGSRNECFVHDAKVNRSTE 329
Q + LT ++G++G GKTT++ L +TG M R D+ R T
Sbjct: 905 QGFVVPGKLTALMGESGAGKTTLLNVLAQRVDTGVVTGDMLVNGRG----LDSTFQRRTG 960
Query: 330 VLGQVKLKIVNAKDKQ-LEVTRSMKVTALAKKKTKFQTLDSFLSTVD 467
+ Q + I + ++ L + +++ A K++ ++S + ++
Sbjct: 961 YVQQQDVHIGESTVREALRFSAALRQPASVPLSEKYEYVESVIKLLE 1007
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 195 LILGQNGCGKTTIIECLRYAITGQMPP 275
L+LG + GKTTI++CL ++ P
Sbjct: 20 LLLGLDNAGKTTILKCLLNEDVNEVSP 46
>SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 246
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 195 LILGQNGCGKTTIIECLRYAITGQMPPGSRNECFVHD 305
L++G++ GK I+ A+TG +P G +E F +D
Sbjct: 5 LVIGRSNSGKLDFIK----ALTGSLPKGLDDEAFNND 37
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 26.6 bits (56), Expect = 2.2
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Frame = +3
Query: 117 LAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGSRNE-- 290
L++ + ++ R + PL+LI G G GKT + Y + ++
Sbjct: 385 LSVPNLPKLNASQSEAVRAVLSKPLSLIQGPPGTGKTVTSASVVYHLATMQSRKRKSHSP 444
Query: 291 ---CFVHDAKVNRSTEVLGQVKLKIVNAKDKQLE 383
C + V++ E + + L++V K E
Sbjct: 445 VLVCAPSNVAVDQLAEKIHRTGLRVVRVAAKSRE 478
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 25.8 bits (54), Expect = 3.9
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +3
Query: 192 TLILGQNGCGKTTIIECL 245
TL++G NG GK+T+++ L
Sbjct: 33 TLLVGANGAGKSTLLKLL 50
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 25.8 bits (54), Expect = 3.9
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +3
Query: 180 DSPLTLILGQNGCGKTT 230
D+ + ++LG+NG GKTT
Sbjct: 374 DAEIIVLLGENGTGKTT 390
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -2
Query: 253 AYLKHSIIVVLPHPFCPNISVNGESNSMRCSSVSSGP-KLLIPLIA 119
+Y SII + P ++ VN + N++ +SVS+G +L +P ++
Sbjct: 52 SYSSTSIIHSVSSPVDCSLDVNNQINTINITSVSAGTNELFLPTLS 97
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 198 ILGQNGCGKTTIIECLRYAITGQMPPGSRNECFVHD 305
++G NG GK+T+I+ L TG++ P + E + H+
Sbjct: 705 VIGPNGAGKSTLIKVL----TGELLP-TVGEIYQHE 735
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +3
Query: 195 LILGQNGCGKTTIIECLRYAITGQMPPGSRNE--CFVHDAKVNRSTEVLGQVKLKIVNAK 368
+I+G+NG GK+ +R+ ++ SR E +H+ +T + V++ NA
Sbjct: 29 VIVGRNGSGKSNFFAAIRFVLSDAYTHLSREERQALLHEGP--GATVMSAYVEVTFANAD 86
Query: 369 DK 374
++
Sbjct: 87 NR 88
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 198 ILGQNGCGKTTIIECLRYAIT 260
I+G G G+TT + C++ + T
Sbjct: 35 IIGNTGSGRTTFLRCIQGSFT 55
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 323 NRSTRSSEIKDCQCKRQTVGGDKVHEGDCLSQEKDK 430
+ S+ S+ K + K + G + + +GD S EKDK
Sbjct: 143 SESSEKSKKKKKKSKSKDDGSEALDDGDIESSEKDK 178
>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 6.8
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = -2
Query: 184 ESNSMRCSSVSSGPKLLIPLIASDFTPAILYVRF----SYGLTL 65
ES SM + S PK IPL ILYV F SYG+T+
Sbjct: 243 ESVSMTAAE-SKNPKKAIPLAVRQTFWRILYVYFGISISYGITV 285
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 279 SRNECFVHDAKVNRSTEVLGQVKLKIVNAKDKQLEVTRSMK 401
S+ EC K+N + ++KLK+ A K E+ S +
Sbjct: 578 SQAECVSFQEKINELNSQIDELKLKLNEANKKYQELAISFE 618
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/32 (25%), Positives = 20/32 (62%)
Frame = -2
Query: 238 SIIVVLPHPFCPNISVNGESNSMRCSSVSSGP 143
++ V+ HP CP ++V+G ++++ + + P
Sbjct: 715 AVNVIEGHPRCPTLAVSGIDSTVKIFNTENTP 746
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 159 DEQRILFDSPLTLILGQNGCGKTTII 236
D +I F + ++G NG GK+ I+
Sbjct: 109 DSLKINFGPRINFVIGHNGSGKSAIL 134
>SPAC1782.05 |||phosphotyrosyl phosphatase activator
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 411 LAKKKTKFQTLDSFLSTVDESGKTKDVSS 497
L K+ ++ +DSF+ +DE+ K K +S+
Sbjct: 25 LFKEGDAYKLIDSFICDLDEAVKDKPISA 53
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,185,841
Number of Sequences: 5004
Number of extensions: 43091
Number of successful extensions: 151
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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