Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314B04f
         (521 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    29   0.095
U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette...    26   0.88 
U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette...    26   0.88 
U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette...    26   0.88 
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    25   2.0  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    24   3.6  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    24   3.6  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 29.1 bits (62), Expect = 0.095
 Identities = 12/53 (22%), Positives = 29/53 (54%)
 Frame = +3

Query: 108 VKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQ 266
           +K + I+G +S+  +   E    FD    +++G+NG GK+     +++ ++ +
Sbjct: 3   IKQVIIQGFKSYREQTVVEP---FDKRHNVVVGRNGSGKSNFFYAIQFVLSDE 52


>U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 25.8 bits (54), Expect = 0.88
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 189 LTLILGQNGCGKTTIIECLRYAITGQMPPG 278
           L  ++G +G GKTT++  L +    + PPG
Sbjct: 128 LLAVMGSSGAGKTTLLNALAF----RSPPG 153


>U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 25.8 bits (54), Expect = 0.88
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 189 LTLILGQNGCGKTTIIECLRYAITGQMPPG 278
           L  ++G +G GKTT++  L +    + PPG
Sbjct: 128 LLAVMGSSGAGKTTLLNALAF----RSPPG 153


>U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 673

 Score = 25.8 bits (54), Expect = 0.88
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 189 LTLILGQNGCGKTTIIECLRYAITGQMPPG 278
           L  ++G +G GKTT++  L +    + PPG
Sbjct: 106 LLAVMGSSGAGKTTLLNALAF----RSPPG 131


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
 Frame = +3

Query: 177 FDSPLTLILGQNGCGKTTIIECLRYAI--TGQMPPGSRNECFVHDAKVNRSTE--VLGQV 344
           F    + I+G NG GK+ +I+ + +      Q     +    +H++  + +T    +G  
Sbjct: 92  FHQRFSSIIGPNGSGKSNVIDSMLFVFGYRAQKIRSKKLSVLMHNSAKHPNTNSCTVGVH 151

Query: 345 KLKIVNAKDKQL-EVTRSMKVTALAKKKTKFQTLDSFLSTVDESGKTKDVS 494
             +IV+ +D    EV  S  V A    +T F+   S+ +  ++    K+VS
Sbjct: 152 FKQIVDREDGSFDEVPNSAFVVA----RTAFRDNSSYYTIDNKRVHFKEVS 198


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.8 bits (49), Expect = 3.6
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 177 FDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGSRNEC 293
           F+    L++G+NG GK+ I+  +   +      G  N C
Sbjct: 105 FNKRANLLVGKNGSGKSAILAAMTIGL--GCNAGQTNRC 141


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.8 bits (49), Expect = 3.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 189 LTLILGQNGCGKTTII 236
           L +ILG NG GK+ I+
Sbjct: 32  LNIILGPNGTGKSAIV 47


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 550,407
Number of Sequences: 2352
Number of extensions: 10122
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 47783067
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)