Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314B04f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U63139-1|AAB07119.1| 1312|Homo sapiens Rad50 protein. 130 2e-30
BC108282-1|AAI08283.1| 723|Homo sapiens RAD50 protein protein. 130 2e-30
BC073850-1|AAH73850.1| 723|Homo sapiens RAD50 protein protein. 130 2e-30
BC062603-1|AAH62603.1| 557|Homo sapiens RAD50 protein protein. 130 2e-30
AF057299-1|AAD50325.1| 1312|Homo sapiens RAD50-2 protein protein. 130 2e-30
Z75311-1|CAA99729.1| 1318|Homo sapiens RAD50 homologue hsRAD50 p... 127 2e-29
BC140005-1|AAI40006.1| 110|Homo sapiens RAD50 protein protein. 116 7e-26
X97187-1|CAA65825.1| 1704|Homo sapiens ABC-C transporter protein. 34 0.35
U78735-1|AAC50967.1| 1704|Homo sapiens ABC3 protein. 34 0.35
DQ073080-1|AAY57325.1| 1704|Homo sapiens ATP-binding cassette, s... 34 0.35
AK024464-1|BAB15754.1| 575|Homo sapiens FLJ00057 protein protein. 34 0.35
AF319995-1|AAM73554.1| 1087|Homo sapiens helicase B protein. 34 0.35
AB210044-1|BAE06126.1| 1708|Homo sapiens ABCA3 variant protein p... 34 0.35
AB070929-1|BAB86781.1| 1704|Homo sapiens lamellar body membrane ... 34 0.35
AB210040-1|BAE06122.1| 2303|Homo sapiens ABCA4 variant protein p... 32 1.1
Y15635-1|CAA75729.1| 2273|Homo sapiens ABCR protein. 32 1.4
U88667-1|AAC51144.1| 2273|Homo sapiens ATP-binding cassette tran... 32 1.4
U65533-1|AAC50771.1| 1118|Homo sapiens regulator of nonsense tra... 32 1.4
U59323-1|AAC51140.1| 1118|Homo sapiens homolog of yeast UPF1 pro... 32 1.4
D86988-1|BAA19664.2| 1151|Homo sapiens KIAA0221 protein. 32 1.4
BC039817-1|AAH39817.1| 1118|Homo sapiens UPF1 regulator of nonse... 32 1.4
BC037946-1|AAH37946.1| 238|Homo sapiens HELB protein protein. 32 1.4
AF074016-1|AAC26788.1| 1118|Homo sapiens nonsense-mediated mRNA ... 32 1.4
AF001945-1|AAC05632.1| 2273|Homo sapiens rim ABC transporter pro... 32 1.4
AF000148-1|AAC23915.1| 2273|Homo sapiens ATP-binding cassette tr... 32 1.4
AC003972-1|AAB94785.1| 1118|Homo sapiens pNORF1 protein. 32 1.4
AY204751-1|AAP13576.1| 5058|Homo sapiens ABC A13 protein. 31 2.4
AK131360-1|BAD18512.1| 1186|Homo sapiens mRNA. protein. 31 2.4
AK128570-1|BAC87504.1| 851|Homo sapiens protein ( Homo sapiens ... 31 2.4
AF501281-1|AAO59914.1| 2127|Homo sapiens ATP binding cassette tr... 31 2.4
U86136-1|AAC51107.1| 2627|Homo sapiens telomerase-associated pro... 31 3.2
BC045554-1|AAH45554.2| 498|Homo sapiens PDXDC1 protein protein. 31 3.2
AB209669-1|BAD92906.1| 1903|Homo sapiens Telomerase protein comp... 31 3.2
BT007058-1|AAP35707.1| 320|Homo sapiens replication factor C (a... 30 4.3
BC002813-1|AAH02813.1| 320|Homo sapiens replication factor C (a... 30 4.3
AF483622-1|AAL82503.1| 320|Homo sapiens replication factor C (a... 30 4.3
AC005081-2|AAP22335.1| 320|Homo sapiens unknown protein. 30 4.3
X76388-1|CAA53972.1| 599|Homo sapiens RNase L inhibitor protein. 29 7.5
X74987-1|CAA52920.1| 402|Homo sapiens endoribonuclease protein. 29 7.5
DQ148409-1|AAZ38723.1| 599|Homo sapiens ATP-binding cassette, s... 29 7.5
BT009779-1|AAP88781.1| 599|Homo sapiens ATP-binding cassette, s... 29 7.5
BC047324-1|AAH47324.1| 1217|Homo sapiens structural maintenance ... 29 7.5
BC016988-1|AAH16988.1| 345|Homo sapiens Unknown (protein for IM... 29 7.5
BC016283-1|AAH16283.1| 599|Homo sapiens ATP-binding cassette, s... 29 7.5
AL807752-22|CAI12768.1| 2435|Homo sapiens ATP-binding cassette, ... 29 7.5
AL359846-6|CAH73579.1| 2261|Homo sapiens ATP-binding cassette, s... 29 7.5
AL353685-3|CAH72444.1| 2261|Homo sapiens ATP-binding cassette, s... 29 7.5
AK130814-1|BAC85435.1| 546|Homo sapiens protein ( Homo sapiens ... 29 7.5
AJ012376-1|CAA10005.1| 2201|Homo sapiens ATP-binding cassette tr... 29 7.5
AF327705-1|AAK14335.1| 2436|Homo sapiens ABC transporter ABCA2 p... 29 7.5
AF327657-1|AAK14334.1| 2436|Homo sapiens ABC transporter ABCA2 p... 29 7.5
AF287262-1|AAK43526.1| 2261|Homo sapiens ATP-binding cassette 1 ... 29 7.5
AF285167-1|AAF98175.1| 2261|Homo sapiens ATP-binding cassette tr... 29 7.5
AF275948-1|AAF86276.1| 2261|Homo sapiens ABCA1 protein. 29 7.5
AF178941-1|AAG09372.1| 2436|Homo sapiens ATP-binding cassette su... 29 7.5
AF165281-1|AAD49849.1| 2201|Homo sapiens ATP cassette binding tr... 29 7.5
AB177854-1|BAD66832.1| 1440|Homo sapiens KIAA1062 splice variant... 29 7.5
AB062293-1|BAB93476.1| 599|Homo sapiens ATP-binding cassette su... 29 7.5
AB055982-1|BAB63210.1| 2261|Homo sapiens ABCA1 protein. 29 7.5
AB028985-1|BAA83014.2| 1771|Homo sapiens KIAA1062 protein protein. 29 7.5
BC126107-1|AAI26108.1| 2627|Homo sapiens telomerase-associated p... 29 9.9
AY247105-1|AAO72160.1| 1543|Homo sapiens ATP-binding cassette su... 29 9.9
AY247065-1|AAO72161.1| 1543|Homo sapiens ATP-binding cassette su... 29 9.9
AY028900-1|AAK30025.1| 1543|Homo sapiens ATP-binding cassette A1... 29 9.9
>U63139-1|AAB07119.1| 1312|Homo sapiens Rad50 protein.
Length = 1312
Score = 130 bits (315), Expect = 2e-30
Identities = 63/139 (45%), Positives = 94/139 (67%)
Frame = +3
Query: 99 MAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPG 278
M+ ++ ++I G+RSFG ED D+Q I F SPLT+++G NG GKTTIIECL+Y TG PPG
Sbjct: 1 MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPG 60
Query: 279 SRNECFVHDAKVNRSTEVLGQVKLKIVNAKDKQLEVTRSMKVTALAKKKTKFQTLDSFLS 458
++ FVHD KV + T+V Q++L+ + + + V RSM V KKT+F+TL+ +
Sbjct: 61 TKGNTFVHDPKVAQETDVRAQIRLQFRDVNGELIAVQRSM-VCTQKSKKTEFKTLEGVI- 118
Query: 459 TVDESGKTKDVSSRCADLD 515
T + G+ +SS+CA++D
Sbjct: 119 TRTKHGEKVSLSSKCAEID 137
>BC108282-1|AAI08283.1| 723|Homo sapiens RAD50 protein protein.
Length = 723
Score = 130 bits (315), Expect = 2e-30
Identities = 63/139 (45%), Positives = 94/139 (67%)
Frame = +3
Query: 99 MAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPG 278
M+ ++ ++I G+RSFG ED D+Q I F SPLT+++G NG GKTTIIECL+Y TG PPG
Sbjct: 1 MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPG 60
Query: 279 SRNECFVHDAKVNRSTEVLGQVKLKIVNAKDKQLEVTRSMKVTALAKKKTKFQTLDSFLS 458
++ FVHD KV + T+V Q++L+ + + + V RSM V KKT+F+TL+ +
Sbjct: 61 TKGNTFVHDPKVAQETDVRAQIRLQFRDVNGELIAVQRSM-VCTQKSKKTEFKTLEGVI- 118
Query: 459 TVDESGKTKDVSSRCADLD 515
T + G+ +SS+CA++D
Sbjct: 119 TRTKHGEKVSLSSKCAEID 137
>BC073850-1|AAH73850.1| 723|Homo sapiens RAD50 protein protein.
Length = 723
Score = 130 bits (315), Expect = 2e-30
Identities = 63/139 (45%), Positives = 94/139 (67%)
Frame = +3
Query: 99 MAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPG 278
M+ ++ ++I G+RSFG ED D+Q I F SPLT+++G NG GKTTIIECL+Y TG PPG
Sbjct: 1 MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPG 60
Query: 279 SRNECFVHDAKVNRSTEVLGQVKLKIVNAKDKQLEVTRSMKVTALAKKKTKFQTLDSFLS 458
++ FVHD KV + T+V Q++L+ + + + V RSM V KKT+F+TL+ +
Sbjct: 61 TKGNTFVHDPKVAQETDVRAQIRLQFRDVNGELIAVQRSM-VCTQKSKKTEFKTLEGVI- 118
Query: 459 TVDESGKTKDVSSRCADLD 515
T + G+ +SS+CA++D
Sbjct: 119 TRTKHGEKVSLSSKCAEID 137
>BC062603-1|AAH62603.1| 557|Homo sapiens RAD50 protein protein.
Length = 557
Score = 130 bits (315), Expect = 2e-30
Identities = 63/139 (45%), Positives = 94/139 (67%)
Frame = +3
Query: 99 MAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPG 278
M+ ++ ++I G+RSFG ED D+Q I F SPLT+++G NG GKTTIIECL+Y TG PPG
Sbjct: 1 MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPG 60
Query: 279 SRNECFVHDAKVNRSTEVLGQVKLKIVNAKDKQLEVTRSMKVTALAKKKTKFQTLDSFLS 458
++ FVHD KV + T+V Q++L+ + + + V RSM V KKT+F+TL+ +
Sbjct: 61 TKGNTFVHDPKVAQETDVRAQIRLQFRDVNGELIAVQRSM-VCTQKSKKTEFKTLEGVI- 118
Query: 459 TVDESGKTKDVSSRCADLD 515
T + G+ +SS+CA++D
Sbjct: 119 TRTKHGEKVSLSSKCAEID 137
>AF057299-1|AAD50325.1| 1312|Homo sapiens RAD50-2 protein protein.
Length = 1312
Score = 130 bits (315), Expect = 2e-30
Identities = 63/139 (45%), Positives = 94/139 (67%)
Frame = +3
Query: 99 MAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPG 278
M+ ++ ++I G+RSFG ED D+Q I F SPLT+++G NG GKTTIIECL+Y TG PPG
Sbjct: 1 MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPG 60
Query: 279 SRNECFVHDAKVNRSTEVLGQVKLKIVNAKDKQLEVTRSMKVTALAKKKTKFQTLDSFLS 458
++ FVHD KV + T+V Q++L+ + + + V RSM V KKT+F+TL+ +
Sbjct: 61 TKGNTFVHDPKVAQETDVRAQIRLQFRDVNGELIAVQRSM-VCTQKSKKTEFKTLEGVI- 118
Query: 459 TVDESGKTKDVSSRCADLD 515
T + G+ +SS+CA++D
Sbjct: 119 TRTKHGEKVSLSSKCAEID 137
>Z75311-1|CAA99729.1| 1318|Homo sapiens RAD50 homologue hsRAD50
protein.
Length = 1318
Score = 127 bits (307), Expect = 2e-29
Identities = 62/133 (46%), Positives = 90/133 (67%)
Frame = +3
Query: 117 LAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGSRNECF 296
++I G+RSFG ED D+Q I F SPLT+++G NG GKTTIIECL+Y TG PPG++ F
Sbjct: 13 MSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTF 72
Query: 297 VHDAKVNRSTEVLGQVKLKIVNAKDKQLEVTRSMKVTALAKKKTKFQTLDSFLSTVDESG 476
VHD KV + T+V Q++L+ + + + V RSM V KKT+F+TL+ + T + G
Sbjct: 73 VHDPKVAQETDVRAQIRLQFRDVNGELIAVQRSM-VCTQKSKKTEFKTLEGVI-TRTKHG 130
Query: 477 KTKDVSSRCADLD 515
+ +SS+CA++D
Sbjct: 131 EKVSLSSKCAEID 143
>BC140005-1|AAI40006.1| 110|Homo sapiens RAD50 protein protein.
Length = 110
Score = 116 bits (278), Expect = 7e-26
Identities = 53/109 (48%), Positives = 75/109 (68%)
Frame = +3
Query: 99 MAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPG 278
M+ ++ ++I G+RSFG ED D+Q I F SPLT+++G NG GKTTIIECL+Y TG PPG
Sbjct: 1 MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPG 60
Query: 279 SRNECFVHDAKVNRSTEVLGQVKLKIVNAKDKQLEVTRSMKVTALAKKK 425
++ FVHD KV + T+V Q++L+ + + + V RSM T +KKK
Sbjct: 61 TKGNTFVHDPKVAQETDVRAQIRLQFRDVNGELIAVQRSMVCTQKSKKK 109
>X97187-1|CAA65825.1| 1704|Homo sapiens ABC-C transporter protein.
Length = 1704
Score = 33.9 bits (74), Expect = 0.35
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +3
Query: 99 MAGVKSLAIRGIRSFGPEDT----DEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQ 266
+AG+K + + G +D D L++ +T++LG NG GKTT + L TG
Sbjct: 527 VAGIKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSML----TGL 582
Query: 267 MPPGS 281
PP S
Sbjct: 583 FPPTS 587
>U78735-1|AAC50967.1| 1704|Homo sapiens ABC3 protein.
Length = 1704
Score = 33.9 bits (74), Expect = 0.35
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +3
Query: 99 MAGVKSLAIRGIRSFGPEDT----DEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQ 266
+AG+K + + G +D D L++ +T++LG NG GKTT + L TG
Sbjct: 527 VAGIKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSML----TGL 582
Query: 267 MPPGS 281
PP S
Sbjct: 583 FPPTS 587
>DQ073080-1|AAY57325.1| 1704|Homo sapiens ATP-binding cassette,
sub-family A (ABC1), member 3 protein.
Length = 1704
Score = 33.9 bits (74), Expect = 0.35
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +3
Query: 99 MAGVKSLAIRGIRSFGPEDT----DEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQ 266
+AG+K + + G +D D L++ +T++LG NG GKTT + L TG
Sbjct: 527 VAGIKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSML----TGL 582
Query: 267 MPPGS 281
PP S
Sbjct: 583 FPPTS 587
>AK024464-1|BAB15754.1| 575|Homo sapiens FLJ00057 protein protein.
Length = 575
Score = 33.9 bits (74), Expect = 0.35
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Frame = +3
Query: 171 ILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGSRNECFVHDAKVNRSTEVLGQVKL 350
++ +P+T+I G+ GCGKTTI+ L I + C + N S E + +
Sbjct: 465 MICSNPVTVISGKGGCGKTTIVSRLFKHIEQLEEREVKKACEDFEQDQNASEEWITFTEQ 524
Query: 351 KIVNAKDKQLEVTRSM---KVTALAKKKT 428
+ A DK +EV + K L ++KT
Sbjct: 525 SQLEA-DKAIEVLLTAPTGKAAGLLRQKT 552
>AF319995-1|AAM73554.1| 1087|Homo sapiens helicase B protein.
Length = 1087
Score = 33.9 bits (74), Expect = 0.35
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Frame = +3
Query: 171 ILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGSRNECFVHDAKVNRSTEVLGQVKL 350
++ +P+T+I G+ GCGKTTI+ L I + C + N S E + +
Sbjct: 464 MICSNPVTVISGKGGCGKTTIVSRLFKHIEQLEEREVKKACEDFEQDQNASEEWITFTEQ 523
Query: 351 KIVNAKDKQLEVTRSM---KVTALAKKKT 428
+ A DK +EV + K L ++KT
Sbjct: 524 SQLEA-DKAIEVLLTAPTGKAAGLLRQKT 551
>AB210044-1|BAE06126.1| 1708|Homo sapiens ABCA3 variant protein
protein.
Length = 1708
Score = 33.9 bits (74), Expect = 0.35
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +3
Query: 99 MAGVKSLAIRGIRSFGPEDT----DEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQ 266
+AG+K + + G +D D L++ +T++LG NG GKTT + L TG
Sbjct: 531 VAGIKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSML----TGL 586
Query: 267 MPPGS 281
PP S
Sbjct: 587 FPPTS 591
>AB070929-1|BAB86781.1| 1704|Homo sapiens lamellar body membrane
specific ATP-binding cassette protein protein.
Length = 1704
Score = 33.9 bits (74), Expect = 0.35
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +3
Query: 99 MAGVKSLAIRGIRSFGPEDT----DEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQ 266
+AG+K + + G +D D L++ +T++LG NG GKTT + L TG
Sbjct: 527 VAGIKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSML----TGL 582
Query: 267 MPPGS 281
PP S
Sbjct: 583 FPPTS 587
>AB210040-1|BAE06122.1| 2303|Homo sapiens ABCA4 variant protein
protein.
Length = 2303
Score = 32.3 bits (70), Expect = 1.1
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 108 VKSLAIRGIRSFGPEDTDEQRILF-DSPLTLILGQNGCGKTTIIECLRYAITGQMPPGS 281
VK+L ++ G D I F ++ +T LG NG GKTT + L TG +PP S
Sbjct: 961 VKNL-VKIFEPCGQPAVDRLNITFYENQITAFLGHNGAGKTTTLSIL----TGLLPPTS 1014
>Y15635-1|CAA75729.1| 2273|Homo sapiens ABCR protein.
Length = 2273
Score = 31.9 bits (69), Expect = 1.4
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 108 VKSLAIRGIRSFGPEDTDEQRILF-DSPLTLILGQNGCGKTTIIECLRYAITGQMPPGS 281
VK+L ++ G D I F ++ +T LG NG GKTT + L TG +PP S
Sbjct: 931 VKNL-VKIFEPCGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSIL----TGLLPPTS 984
>U88667-1|AAC51144.1| 2273|Homo sapiens ATP-binding cassette
transporter protein.
Length = 2273
Score = 31.9 bits (69), Expect = 1.4
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 108 VKSLAIRGIRSFGPEDTDEQRILF-DSPLTLILGQNGCGKTTIIECLRYAITGQMPPGS 281
VK+L ++ G D I F ++ +T LG NG GKTT + L TG +PP S
Sbjct: 931 VKNL-VKIFEPCGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSIL----TGLLPPTS 984
>U65533-1|AAC50771.1| 1118|Homo sapiens regulator of nonsense
transcript stability protein.
Length = 1118
Score = 31.9 bits (69), Expect = 1.4
Identities = 31/116 (26%), Positives = 51/116 (43%)
Frame = +3
Query: 168 RILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGSRNECFVHDAKVNRSTEVLGQVK 347
+ + PL+LI G G GKT + Y + Q G C + V++ TE + Q
Sbjct: 480 KTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-DNGPVLVCAPSNIAVDQLTEKIHQTG 538
Query: 348 LKIVNAKDKQLEVTRSMKVTALAKKKTKFQTLDSFLSTVDESGKTKDVSSRCADLD 515
LK+V K E S V+ LA + + +DS + + + + KD + + D
Sbjct: 539 LKVVRLCPKSREAIDS-PVSFLA-LHNQIRNMDS-MPELQKLQQLKDETGELSSAD 591
>U59323-1|AAC51140.1| 1118|Homo sapiens homolog of yeast UPF1
protein.
Length = 1118
Score = 31.9 bits (69), Expect = 1.4
Identities = 33/135 (24%), Positives = 55/135 (40%)
Frame = +3
Query: 111 KSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGSRNE 290
K +G+ + + PL+LI G G GKT + Y + Q G
Sbjct: 461 KRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-GNGPVLV 519
Query: 291 CFVHDAKVNRSTEVLGQVKLKIVNAKDKQLEVTRSMKVTALAKKKTKFQTLDSFLSTVDE 470
C + V++ TE + Q LK+V K E S V+ LA + + +DS + + +
Sbjct: 520 CAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDS-PVSFLA-LHNQIRNMDS-MPELQK 576
Query: 471 SGKTKDVSSRCADLD 515
+ KD + + D
Sbjct: 577 LQQLKDETGELSSAD 591
>D86988-1|BAA19664.2| 1151|Homo sapiens KIAA0221 protein.
Length = 1151
Score = 31.9 bits (69), Expect = 1.4
Identities = 33/135 (24%), Positives = 55/135 (40%)
Frame = +3
Query: 111 KSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGSRNE 290
K +G+ + + PL+LI G G GKT + Y + Q G
Sbjct: 494 KRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-GNGPVLV 552
Query: 291 CFVHDAKVNRSTEVLGQVKLKIVNAKDKQLEVTRSMKVTALAKKKTKFQTLDSFLSTVDE 470
C + V++ TE + Q LK+V K E S V+ LA + + +DS + + +
Sbjct: 553 CAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDS-PVSFLA-LHNQIRNMDS-MPELQK 609
Query: 471 SGKTKDVSSRCADLD 515
+ KD + + D
Sbjct: 610 LQQLKDETGELSSAD 624
>BC039817-1|AAH39817.1| 1118|Homo sapiens UPF1 regulator of nonsense
transcripts homolog (yeast) protein.
Length = 1118
Score = 31.9 bits (69), Expect = 1.4
Identities = 33/135 (24%), Positives = 55/135 (40%)
Frame = +3
Query: 111 KSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGSRNE 290
K +G+ + + PL+LI G G GKT + Y + Q G
Sbjct: 461 KRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-GNGPVLV 519
Query: 291 CFVHDAKVNRSTEVLGQVKLKIVNAKDKQLEVTRSMKVTALAKKKTKFQTLDSFLSTVDE 470
C + V++ TE + Q LK+V K E S V+ LA + + +DS + + +
Sbjct: 520 CAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDS-PVSFLA-LHNQIRNMDS-MPELQK 576
Query: 471 SGKTKDVSSRCADLD 515
+ KD + + D
Sbjct: 577 LQQLKDETGELSSAD 591
>BC037946-1|AAH37946.1| 238|Homo sapiens HELB protein protein.
Length = 238
Score = 31.9 bits (69), Expect = 1.4
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 171 ILFDSPLTLILGQNGCGKTTIIECL 245
++ +P+T+I G+ GCGKTTI+ L
Sbjct: 177 MICSNPVTVISGKGGCGKTTIVSRL 201
>AF074016-1|AAC26788.1| 1118|Homo sapiens nonsense-mediated mRNA
decay trans-acting factor protein.
Length = 1118
Score = 31.9 bits (69), Expect = 1.4
Identities = 33/135 (24%), Positives = 55/135 (40%)
Frame = +3
Query: 111 KSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGSRNE 290
K +G+ + + PL+LI G G GKT + Y + Q G
Sbjct: 461 KRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-GNGPVLV 519
Query: 291 CFVHDAKVNRSTEVLGQVKLKIVNAKDKQLEVTRSMKVTALAKKKTKFQTLDSFLSTVDE 470
C + V++ TE + Q LK+V K E S V+ LA + + +DS + + +
Sbjct: 520 CAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDS-PVSFLA-LHNQIRNMDS-MPELQK 576
Query: 471 SGKTKDVSSRCADLD 515
+ KD + + D
Sbjct: 577 LQQLKDETGELSSAD 591
>AF001945-1|AAC05632.1| 2273|Homo sapiens rim ABC transporter protein.
Length = 2273
Score = 31.9 bits (69), Expect = 1.4
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 108 VKSLAIRGIRSFGPEDTDEQRILF-DSPLTLILGQNGCGKTTIIECLRYAITGQMPPGS 281
VK+L ++ G D I F ++ +T LG NG GKTT + L TG +PP S
Sbjct: 931 VKNL-VKIFEPCGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSIL----TGLLPPTS 984
>AF000148-1|AAC23915.1| 2273|Homo sapiens ATP-binding cassette
transporter protein.
Length = 2273
Score = 31.9 bits (69), Expect = 1.4
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 108 VKSLAIRGIRSFGPEDTDEQRILF-DSPLTLILGQNGCGKTTIIECLRYAITGQMPPGS 281
VK+L ++ G D I F ++ +T LG NG GKTT + L TG +PP S
Sbjct: 931 VKNL-VKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSIL----TGLLPPTS 984
>AC003972-1|AAB94785.1| 1118|Homo sapiens pNORF1 protein.
Length = 1118
Score = 31.9 bits (69), Expect = 1.4
Identities = 33/135 (24%), Positives = 55/135 (40%)
Frame = +3
Query: 111 KSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGSRNE 290
K +G+ + + PL+LI G G GKT + Y + Q G
Sbjct: 461 KRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-GNGPVLV 519
Query: 291 CFVHDAKVNRSTEVLGQVKLKIVNAKDKQLEVTRSMKVTALAKKKTKFQTLDSFLSTVDE 470
C + V++ TE + Q LK+V K E S V+ LA + + +DS + + +
Sbjct: 520 CAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDS-PVSFLA-LHNQIRNMDS-MPELQK 576
Query: 471 SGKTKDVSSRCADLD 515
+ KD + + D
Sbjct: 577 LQQLKDETGELSSAD 591
>AY204751-1|AAP13576.1| 5058|Homo sapiens ABC A13 protein.
Length = 5058
Score = 31.1 bits (67), Expect = 2.4
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +3
Query: 189 LTLILGQNGCGKTTIIECLRYAITGQMPPGS 281
+T +LG NG GKTTII L TG PP S
Sbjct: 3870 ITALLGTNGAGKTTIISML----TGLHPPTS 3896
>AK131360-1|BAD18512.1| 1186|Homo sapiens mRNA. protein.
Length = 1186
Score = 31.1 bits (67), Expect = 2.4
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +3
Query: 189 LTLILGQNGCGKTTIIECLRYAITGQMPPGS 281
+T +LG NG GKTTII L TG PP S
Sbjct: 130 ITALLGTNGAGKTTIISML----TGLHPPTS 156
>AK128570-1|BAC87504.1| 851|Homo sapiens protein ( Homo sapiens
cDNA FLJ46729 fis, clone TRACH3019370, weakly similar
to ATP-binding cassette, sub-family A, member 1. ).
Length = 851
Score = 31.1 bits (67), Expect = 2.4
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +3
Query: 189 LTLILGQNGCGKTTIIECLRYAITGQMPPGS 281
+T +LG NG GKTTII L TG PP S
Sbjct: 625 ITALLGTNGAGKTTIISML----TGLHPPTS 651
>AF501281-1|AAO59914.1| 2127|Homo sapiens ATP binding cassette
transporter A13 protein.
Length = 2127
Score = 31.1 bits (67), Expect = 2.4
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +3
Query: 189 LTLILGQNGCGKTTIIECLRYAITGQMPPGS 281
+T +LG NG GKTTII L TG PP S
Sbjct: 938 ITALLGTNGAGKTTIISML----TGLHPPTS 964
>U86136-1|AAC51107.1| 2627|Homo sapiens telomerase-associated protein
TP-1 protein.
Length = 2627
Score = 30.7 bits (66), Expect = 3.2
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +3
Query: 150 EDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGSR 284
+DT +Q +L L+L+ GQ+G GKT + L A+ Q P G++
Sbjct: 1150 QDTVQQLMLPHGRLSLVTGQSGQGKTAFLASLVSAL--QAPDGAK 1192
>BC045554-1|AAH45554.2| 498|Homo sapiens PDXDC1 protein protein.
Length = 498
Score = 30.7 bits (66), Expect = 3.2
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 183 SPLTLILGQNGCGKTTIIECLRYAITGQMPPGSRNE 290
SPL G + CG TT +C+R +T ++ PGS E
Sbjct: 460 SPLMTAAGWSHCGTTTRYDCVRSRLTTRL-PGSTGE 494
>AB209669-1|BAD92906.1| 1903|Homo sapiens Telomerase protein
component 1 variant protein.
Length = 1903
Score = 30.7 bits (66), Expect = 3.2
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +3
Query: 150 EDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGSR 284
+DT +Q +L L+L+ GQ+G GKT + L A+ Q P G++
Sbjct: 499 QDTVQQLMLPHGRLSLVTGQSGQGKTAFLASLVSAL--QAPDGAK 541
>BT007058-1|AAP35707.1| 320|Homo sapiens replication factor C
(activator 1) 2, 40kDa protein.
Length = 320
Score = 30.3 bits (65), Expect = 4.3
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 14/123 (11%)
Frame = +3
Query: 144 GPEDTDEQRILF----DSPLTLILGQNGCGKTTIIECLRYAITG------QMPPGSRNEC 293
G EDT + +F + P +I G G GKTT I CL A+ G + + N+
Sbjct: 52 GNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDS 111
Query: 294 FVHDAK--VNRSTEVLGQVK--LKIVNAKDKQLEVTRSMKVTALAKKKTKFQTLDSFLST 461
A+ + R+ E+ + NA DK +E +S K T Q L ++
Sbjct: 112 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNV 171
Query: 462 VDE 470
+++
Sbjct: 172 IEK 174
>BC002813-1|AAH02813.1| 320|Homo sapiens replication factor C
(activator 1) 2, 40kDa protein.
Length = 320
Score = 30.3 bits (65), Expect = 4.3
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 14/123 (11%)
Frame = +3
Query: 144 GPEDTDEQRILF----DSPLTLILGQNGCGKTTIIECLRYAITG------QMPPGSRNEC 293
G EDT + +F + P +I G G GKTT I CL A+ G + + N+
Sbjct: 52 GNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDS 111
Query: 294 FVHDAK--VNRSTEVLGQVK--LKIVNAKDKQLEVTRSMKVTALAKKKTKFQTLDSFLST 461
A+ + R+ E+ + NA DK +E +S K T Q L ++
Sbjct: 112 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNV 171
Query: 462 VDE 470
+++
Sbjct: 172 IEK 174
>AF483622-1|AAL82503.1| 320|Homo sapiens replication factor C
(activator 1) 2 (40kD) protein.
Length = 320
Score = 30.3 bits (65), Expect = 4.3
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 14/123 (11%)
Frame = +3
Query: 144 GPEDTDEQRILF----DSPLTLILGQNGCGKTTIIECLRYAITG------QMPPGSRNEC 293
G EDT + +F + P +I G G GKTT I CL A+ G + + N+
Sbjct: 52 GNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDS 111
Query: 294 FVHDAK--VNRSTEVLGQVK--LKIVNAKDKQLEVTRSMKVTALAKKKTKFQTLDSFLST 461
A+ + R+ E+ + NA DK +E +S K T Q L ++
Sbjct: 112 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNV 171
Query: 462 VDE 470
+++
Sbjct: 172 IEK 174
>AC005081-2|AAP22335.1| 320|Homo sapiens unknown protein.
Length = 320
Score = 30.3 bits (65), Expect = 4.3
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 14/123 (11%)
Frame = +3
Query: 144 GPEDTDEQRILF----DSPLTLILGQNGCGKTTIIECLRYAITG------QMPPGSRNEC 293
G EDT + +F + P +I G G GKTT I CL A+ G + + N+
Sbjct: 52 GNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDS 111
Query: 294 FVHDAK--VNRSTEVLGQVK--LKIVNAKDKQLEVTRSMKVTALAKKKTKFQTLDSFLST 461
A+ + R+ E+ + NA DK +E +S K T Q L ++
Sbjct: 112 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNV 171
Query: 462 VDE 470
+++
Sbjct: 172 IEK 174
>X76388-1|CAA53972.1| 599|Homo sapiens RNase L inhibitor protein.
Length = 599
Score = 29.5 bits (63), Expect = 7.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 180 DSPLTLILGQNGCGKTTIIECL 245
DS + ++LG+NG GKTT I L
Sbjct: 371 DSEIMVMLGENGTGKTTFIRML 392
>X74987-1|CAA52920.1| 402|Homo sapiens endoribonuclease protein.
Length = 402
Score = 29.5 bits (63), Expect = 7.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 180 DSPLTLILGQNGCGKTTIIECL 245
DS + ++LG+NG GKTT I L
Sbjct: 174 DSEIMVMLGENGTGKTTFIRML 195
>DQ148409-1|AAZ38723.1| 599|Homo sapiens ATP-binding cassette,
sub-family E (OABP), member 1 protein.
Length = 599
Score = 29.5 bits (63), Expect = 7.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 180 DSPLTLILGQNGCGKTTIIECL 245
DS + ++LG+NG GKTT I L
Sbjct: 371 DSEIMVMLGENGTGKTTFIRML 392
>BT009779-1|AAP88781.1| 599|Homo sapiens ATP-binding cassette,
sub-family E (OABP), member 1 protein.
Length = 599
Score = 29.5 bits (63), Expect = 7.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 180 DSPLTLILGQNGCGKTTIIECL 245
DS + ++LG+NG GKTT I L
Sbjct: 371 DSEIMVMLGENGTGKTTFIRML 392
>BC047324-1|AAH47324.1| 1217|Homo sapiens structural maintenance of
chromosomes 3 protein.
Length = 1217
Score = 29.5 bits (63), Expect = 7.5
Identities = 13/53 (24%), Positives = 30/53 (56%)
Frame = +3
Query: 108 VKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQ 266
+K + I+G RS+ + + F S +I+G+NG GK+ + +++ ++ +
Sbjct: 3 IKQVIIQGFRSYRDQTIVDP---FSSKHNVIVGRNGSGKSNLFYAIQFVLSDE 52
>BC016988-1|AAH16988.1| 345|Homo sapiens Unknown (protein for
IMAGE:4396587) protein.
Length = 345
Score = 29.5 bits (63), Expect = 7.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 180 DSPLTLILGQNGCGKTTIIECL 245
DS + ++LG+NG GKTT I L
Sbjct: 117 DSEIMVMLGENGTGKTTFIRML 138
>BC016283-1|AAH16283.1| 599|Homo sapiens ATP-binding cassette,
sub-family E (OABP), member 1 protein.
Length = 599
Score = 29.5 bits (63), Expect = 7.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 180 DSPLTLILGQNGCGKTTIIECL 245
DS + ++LG+NG GKTT I L
Sbjct: 371 DSEIMVMLGENGTGKTTFIRML 392
>AL807752-22|CAI12768.1| 2435|Homo sapiens ATP-binding cassette,
sub-family A (ABC1), membertor protein.
Length = 2435
Score = 29.5 bits (63), Expect = 7.5
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 174 LFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGSRN-ECFVHDAK 311
L+++ + LG NG GKTT + L TG PP S + + HD +
Sbjct: 1014 LYENQVVSFLGHNGAGKTTTMSIL----TGLFPPTSGSATIYGHDIR 1056
>AL359846-6|CAH73579.1| 2261|Homo sapiens ATP-binding cassette,
sub-family A (ABC1), memberisiae) protein.
Length = 2261
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 177 FDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGS 281
++ +T LG NG GKTT + L TG PP S
Sbjct: 924 YEGQITSFLGHNGAGKTTTMSIL----TGLFPPTS 954
>AL353685-3|CAH72444.1| 2261|Homo sapiens ATP-binding cassette,
sub-family A (ABC1), memberog, Drosophila) protein.
Length = 2261
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 177 FDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGS 281
++ +T LG NG GKTT + L TG PP S
Sbjct: 924 YEGQITSFLGHNGAGKTTTMSIL----TGLFPPTS 954
>AK130814-1|BAC85435.1| 546|Homo sapiens protein ( Homo sapiens
cDNA FLJ27304 fis, clone TMS05176, highly similar to
ATP-binding cassette, sub-family A, member 1. ).
Length = 546
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 177 FDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGS 281
++ +T LG NG GKTT + L TG PP S
Sbjct: 98 YEGQITSFLGHNGAGKTTTMSIL----TGLFPPTS 128
>AJ012376-1|CAA10005.1| 2201|Homo sapiens ATP-binding cassette
transporter-1 (ABC-1) protein.
Length = 2201
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 177 FDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGS 281
++ +T LG NG GKTT + L TG PP S
Sbjct: 864 YEGQITSFLGHNGAGKTTTMSIL----TGLFPPTS 894
>AF327705-1|AAK14335.1| 2436|Homo sapiens ABC transporter ABCA2
protein.
Length = 2436
Score = 29.5 bits (63), Expect = 7.5
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 174 LFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGSRN-ECFVHDAK 311
L+++ + LG NG GKTT + L TG PP S + + HD +
Sbjct: 1015 LYENQVVSFLGHNGAGKTTTMSIL----TGLFPPTSGSATIYGHDIR 1057
>AF327657-1|AAK14334.1| 2436|Homo sapiens ABC transporter ABCA2
protein.
Length = 2436
Score = 29.5 bits (63), Expect = 7.5
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 174 LFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGSRN-ECFVHDAK 311
L+++ + LG NG GKTT + L TG PP S + + HD +
Sbjct: 1015 LYENQVVSFLGHNGAGKTTTMSIL----TGLFPPTSGSATIYGHDIR 1057
>AF287262-1|AAK43526.1| 2261|Homo sapiens ATP-binding cassette 1
sub-family A member 1 protein.
Length = 2261
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 177 FDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGS 281
++ +T LG NG GKTT + L TG PP S
Sbjct: 924 YEGQITSFLGHNGAGKTTTMSIL----TGLFPPTS 954
>AF285167-1|AAF98175.1| 2261|Homo sapiens ATP-binding cassette
transporter 1 protein.
Length = 2261
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 177 FDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGS 281
++ +T LG NG GKTT + L TG PP S
Sbjct: 924 YEGQITSFLGHNGAGKTTTMSIL----TGLFPPTS 954
>AF275948-1|AAF86276.1| 2261|Homo sapiens ABCA1 protein.
Length = 2261
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 177 FDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGS 281
++ +T LG NG GKTT + L TG PP S
Sbjct: 924 YEGQITSFLGHNGAGKTTTMSIL----TGLFPPTS 954
>AF178941-1|AAG09372.1| 2436|Homo sapiens ATP-binding cassette
sub-family A member 2 protein.
Length = 2436
Score = 29.5 bits (63), Expect = 7.5
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 174 LFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGSRN-ECFVHDAK 311
L+++ + LG NG GKTT + L TG PP S + + HD +
Sbjct: 1015 LYENQVVSFLGHNGAGKTTTMSIL----TGLFPPTSGSATIYGHDIR 1057
>AF165281-1|AAD49849.1| 2201|Homo sapiens ATP cassette binding
transporter 1 protein.
Length = 2201
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 177 FDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGS 281
++ +T LG NG GKTT + L TG PP S
Sbjct: 864 YEGQITSFLGHNGAGKTTTMSIL----TGLFPPTS 894
>AB177854-1|BAD66832.1| 1440|Homo sapiens KIAA1062 splice variant 1
protein.
Length = 1440
Score = 29.5 bits (63), Expect = 7.5
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 174 LFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGSRN-ECFVHDAK 311
L+++ + LG NG GKTT + L TG PP S + + HD +
Sbjct: 364 LYENQVVSFLGHNGAGKTTTMSIL----TGLFPPTSGSATIYGHDIR 406
>AB062293-1|BAB93476.1| 599|Homo sapiens ATP-binding cassette
sub-family E member 1 protein.
Length = 599
Score = 29.5 bits (63), Expect = 7.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 180 DSPLTLILGQNGCGKTTIIECL 245
DS + ++LG+NG GKTT I L
Sbjct: 371 DSEIMVMLGENGTGKTTFIRML 392
>AB055982-1|BAB63210.1| 2261|Homo sapiens ABCA1 protein.
Length = 2261
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 177 FDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGS 281
++ +T LG NG GKTT + L TG PP S
Sbjct: 924 YEGQITSFLGHNGAGKTTTMSIL----TGLFPPTS 954
>AB028985-1|BAA83014.2| 1771|Homo sapiens KIAA1062 protein protein.
Length = 1771
Score = 29.5 bits (63), Expect = 7.5
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 174 LFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGSRN-ECFVHDAK 311
L+++ + LG NG GKTT + L TG PP S + + HD +
Sbjct: 350 LYENQVVSFLGHNGAGKTTTMSIL----TGLFPPTSGSATIYGHDIR 392
>BC126107-1|AAI26108.1| 2627|Homo sapiens telomerase-associated
protein 1 protein.
Length = 2627
Score = 29.1 bits (62), Expect = 9.9
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +3
Query: 150 EDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGSR 284
+DT ++ +L L+L+ GQ+G GKT + L A+ Q P G++
Sbjct: 1150 QDTVQRLMLPHGRLSLVTGQSGQGKTAFLASLVSAL--QAPDGAK 1192
>AY247105-1|AAO72160.1| 1543|Homo sapiens ATP-binding cassette
sub-family A member 10 protein.
Length = 1543
Score = 29.1 bits (62), Expect = 9.9
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 174 LFDSPLTLILGQNGCGKTTIIECL 245
+++ +T ILG NG GK+T++ L
Sbjct: 417 IYEGQITAILGHNGAGKSTLLNIL 440
>AY247065-1|AAO72161.1| 1543|Homo sapiens ATP-binding cassette
sub-family A member 10 protein.
Length = 1543
Score = 29.1 bits (62), Expect = 9.9
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 174 LFDSPLTLILGQNGCGKTTIIECL 245
+++ +T ILG NG GK+T++ L
Sbjct: 417 IYEGQITAILGHNGAGKSTLLNIL 440
>AY028900-1|AAK30025.1| 1543|Homo sapiens ATP-binding cassette A10
protein.
Length = 1543
Score = 29.1 bits (62), Expect = 9.9
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 174 LFDSPLTLILGQNGCGKTTIIECL 245
+++ +T ILG NG GK+T++ L
Sbjct: 417 IYEGQITAILGHNGAGKSTLLNIL 440
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,976,416
Number of Sequences: 237096
Number of extensions: 1538026
Number of successful extensions: 7647
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 7563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7647
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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