Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314B03f
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...    70   2e-13
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    69   5e-13
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb...    26   2.6  
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    25   4.5  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    25   7.9  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   7.9  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    25   7.9  
SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces p...    25   7.9  

>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 70.1 bits (164), Expect = 2e-13
 Identities = 31/39 (79%), Positives = 37/39 (94%)
 Frame = -3

Query: 471 AFDDAIAELDTLNEDSYKDSXLIMQLLRDNLTLWTSDTQ 355
           AFD+AI+ELD+L+E+SYKDS LIMQLLRDNLTLWTSD +
Sbjct: 200 AFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAE 238


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 68.5 bits (160), Expect = 5e-13
 Identities = 30/38 (78%), Positives = 36/38 (94%)
 Frame = -3

Query: 468 FDDAIAELDTLNEDSYKDSXLIMQLLRDNLTLWTSDTQ 355
           FD+AI+ELD+L+E+SYKDS LIMQLLRDNLTLWTSD +
Sbjct: 200 FDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAE 237


>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 172 FAADLPVPSKIKCCVIFDGFVF-LYLHWIADI 80
           FA  LPVP   K C  F  F+  L  +W+ D+
Sbjct: 31  FAPALPVPINDKVCHFFVFFLLTLVFYWVFDL 62


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 110 YKTVKDDTTFNFRRNGKVRCERLLTFLQATARVGFGDDTAPD 235
           ++T   D   +F + G++R  RL+TF       GFG    PD
Sbjct: 237 FETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +2

Query: 149 RNGKVRCERLLTFLQATARVGFGDDTAPDDVLECYSFSY 265
           RNG  +C RLL    A++ +       P D L     S+
Sbjct: 367 RNGAKKCARLLLSFYASSSIPNNQGQYPTDFLSSKDMSF 405


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 57  IYIHQVSSISAIQCKYRNTKPSKMTQHLILDGTGR 161
           I + Q ++I+A+  +YR    +K T  +ILD  G+
Sbjct: 156 IEMKQFTNIAAV-LRYRGVHSAKKTAFIILDNKGK 189


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +2

Query: 59  LYSSGQL-DICNPV*IQKYKTVKDDTTFNFRRNGK 160
           L SS QL DIC    +  Y    DD  F F +N K
Sbjct: 133 LLSSSQLSDICIKDFVTSYLVPYDDVRFFFYKNSK 167


>SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 69  QVSSISAIQCKYRNTKPSKMTQHLILDGTGRSAAN 173
           +++ +S  Q  YR   PS+ +Q LI  G G +  +
Sbjct: 31  ELAGLSVSQAVYREYPPSQYSQVLICCGPGNNGGD 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,491,903
Number of Sequences: 5004
Number of extensions: 24856
Number of successful extensions: 66
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)