Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314B03f
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629...    77   6e-15
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448...    77   7e-15
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065...    76   2e-14
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760...    74   7e-14
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803...    73   2e-13
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553...    71   5e-13
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593...    68   5e-12
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007...    50   7e-07
02_02_0106 + 6814391-6817007,6817086-6817462                           29   1.9  
04_04_0024 - 22216105-22217856                                         27   7.8  

>03_05_0881 +
           28461857-28462263,28462357-28462435,28462798-28462920,
           28463632-28463748,28463861-28463917
          Length = 260

 Score = 77.4 bits (182), Expect = 6e-15
 Identities = 36/44 (81%), Positives = 38/44 (86%)
 Frame = -3

Query: 471 AFDDAIAELDTLNEDSYKDSXLIMQLLRDNLTLWTSDTQGDGDE 340
           AFDDAIAELDTL E+SYKDS LIMQLLRDNLTLWTSD   DG +
Sbjct: 204 AFDDAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDNAEDGGD 247


>08_02_1026 +
           23743186-23743686,23743793-23743915,23744734-23744850,
           23744948-23745001
          Length = 264

 Score = 77.0 bits (181), Expect = 7e-15
 Identities = 35/44 (79%), Positives = 39/44 (88%)
 Frame = -3

Query: 471 AFDDAIAELDTLNEDSYKDSXLIMQLLRDNLTLWTSDTQGDGDE 340
           AFD+AI+ELDTL E+SYKDS LIMQLLRDNLTLWTSD Q DG +
Sbjct: 209 AFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGGD 252


>08_02_0753 -
           20805672-20805731,20805825-20805941,20806394-20806516,
           20806700-20806778,20806867-20807258
          Length = 256

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 37/48 (77%), Positives = 41/48 (85%), Gaps = 1/48 (2%)
 Frame = -3

Query: 471 AFDDAIAELDTLNEDSYKDSXLIMQLLRDNLTLWTSD-TQGDGDEPAE 331
           AFD+AI+ELDTL E+SYKDS LIMQLLRDNLTLWTSD T+  GDE  E
Sbjct: 199 AFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDLTEDGGDEVKE 246


>11_06_0036 +
           19474848-19475188,19475696-19475774,19475880-19476002,
           19476970-19477086,19477169-19477228
          Length = 239

 Score = 73.7 bits (173), Expect = 7e-14
 Identities = 33/44 (75%), Positives = 38/44 (86%)
 Frame = -3

Query: 471 AFDDAIAELDTLNEDSYKDSXLIMQLLRDNLTLWTSDTQGDGDE 340
           AFD+AI+ELD+L E+SYKDS LIMQLLRDNLTLWTSD   DG +
Sbjct: 182 AFDEAISELDSLGEESYKDSTLIMQLLRDNLTLWTSDANDDGGD 225


>04_04_0141 +
           23079516-23079925,23080006-23080084,23080204-23080326,
           23081655-23081771,23081886-23081945
          Length = 262

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 34/44 (77%), Positives = 38/44 (86%)
 Frame = -3

Query: 471 AFDDAIAELDTLNEDSYKDSXLIMQLLRDNLTLWTSDTQGDGDE 340
           AFD+AI+ELDTL+E+SYKDS LIMQLLRDNLTLWTSD   D  E
Sbjct: 205 AFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDISEDTAE 248


>02_04_0360 +
           22353057-22353691,22354716-22355144,22355233-22355311,
           22355472-22355594,22356256-22356372,22356636-22356833
          Length = 526

 Score = 70.9 bits (166), Expect = 5e-13
 Identities = 32/37 (86%), Positives = 36/37 (97%)
 Frame = -3

Query: 471 AFDDAIAELDTLNEDSYKDSXLIMQLLRDNLTLWTSD 361
           AFD+AI+ELDTL+E+SYKDS LIMQLLRDNLTLWTSD
Sbjct: 423 AFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSD 459


>01_01_0767 +
           5931031-5931281,5931414-5931594,5932020-5932129,
           5932212-5932360,5932686-5932738,5933168-5933260
          Length = 278

 Score = 67.7 bits (158), Expect = 5e-12
 Identities = 31/50 (62%), Positives = 38/50 (76%)
 Frame = -3

Query: 471 AFDDAIAELDTLNEDSYKDSXLIMQLLRDNLTLWTSDTQGDGDEPAEGGD 322
           AFD+A+AEL +L+E++YKDS LIMQLLRDNL LW SD   D D+  E  D
Sbjct: 189 AFDEAVAELPSLSEENYKDSTLIMQLLRDNLALWNSDMADDADDIRERTD 238


>11_06_0360 -
           22699524-22699529,22699865-22699899,22700650-22700792,
           22701165-22701220,22701367-22701454,22702737-22703037,
           22704365-22704428
          Length = 230

 Score = 50.4 bits (115), Expect = 7e-07
 Identities = 21/40 (52%), Positives = 30/40 (75%)
 Frame = -3

Query: 471 AFDDAIAELDTLNEDSYKDSXLIMQLLRDNLTLWTSDTQG 352
           A D+A AE+++   + YKDS L+MQLL++NL LWTS+  G
Sbjct: 178 ALDEATAEINSAGVEGYKDSMLMMQLLKENLALWTSELTG 217


>02_02_0106 + 6814391-6817007,6817086-6817462
          Length = 997

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -3

Query: 270 CL*ENE*HSRTSSGAVSSPKPTRAVACKNVKSRSQRTFPFRLKL-NVVSSLTVL 112
           CL +N  H   S   +SSP PT    C N+K        F  KL N ++SL  L
Sbjct: 93  CLLKNLTHLDVSYNNISSPFPTMLYNCSNLKYLDLSNNAFAGKLPNDINSLPAL 146


>04_04_0024 - 22216105-22217856
          Length = 583

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 117 PSKMTQHLILDGTGRSAANDF*HFYKRRLASASVMIPRQTTFSNV 251
           P  +T ++++DG  R+      H   RRL    V +P   TF++V
Sbjct: 284 PDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSV 328


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,744,745
Number of Sequences: 37544
Number of extensions: 166013
Number of successful extensions: 442
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)