Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314B03f
         (476 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical pr...    81   5e-16
U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein ...    81   5e-16
Z66564-2|CAA91474.1|  248|Caenorhabditis elegans Hypothetical pr...    80   7e-16
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical
           protein M117.2 protein.
          Length = 248

 Score = 80.6 bits (190), Expect = 5e-16
 Identities = 40/48 (83%), Positives = 41/48 (85%)
 Frame = -3

Query: 471 AFDDAIAELDTLNEDSYKDSXLIMQLLRDNLTLWTSDTQGDGDEPAEG 328
           AFDDAIAELDTLNEDSYKDS LIMQLLRDNLTLWTSD  G  D+  EG
Sbjct: 196 AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDV-GAEDQEQEG 242


>U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein
           protein.
          Length = 248

 Score = 80.6 bits (190), Expect = 5e-16
 Identities = 40/48 (83%), Positives = 41/48 (85%)
 Frame = -3

Query: 471 AFDDAIAELDTLNEDSYKDSXLIMQLLRDNLTLWTSDTQGDGDEPAEG 328
           AFDDAIAELDTLNEDSYKDS LIMQLLRDNLTLWTSD  G  D+  EG
Sbjct: 196 AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDV-GAEDQEQEG 242


>Z66564-2|CAA91474.1|  248|Caenorhabditis elegans Hypothetical
           protein F52D10.3a protein.
          Length = 248

 Score = 80.2 bits (189), Expect = 7e-16
 Identities = 40/52 (76%), Positives = 42/52 (80%), Gaps = 2/52 (3%)
 Frame = -3

Query: 471 AFDDAIAELDTLNEDSYKDSXLIMQLLRDNLTLWTSDTQGDGDE--PAEGGD 322
           AFDDAIAELDTLNEDSYKDS LIMQLLRDNLTLWTSD   D  +    EGG+
Sbjct: 197 AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDAATDDTDANETEGGN 248


>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 125 DDTTFNFRRNGKVRCERLLT 184
           D   FNFRR G+  C +LLT
Sbjct: 276 DANGFNFRRTGRFSCMQLLT 295


>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 125 DDTTFNFRRNGKVRCERLLT 184
           D   FNFRR G+  C +LLT
Sbjct: 276 DANGFNFRRTGRFSCMQLLT 295


>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 125 DDTTFNFRRNGKVRCERLLT 184
           D   FNFRR G+  C +LLT
Sbjct: 276 DANGFNFRRTGRFSCMQLLT 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,430,889
Number of Sequences: 27780
Number of extensions: 143919
Number of successful extensions: 474
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)