Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314B02f
         (436 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0)              68   4e-12
SB_30340| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.95 
SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)               28   2.9  
SB_41501| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_54999| Best HMM Match : DUF992 (HMM E-Value=1.4)                    27   6.7  
SB_31047| Best HMM Match : CHORD (HMM E-Value=6.2)                     27   8.8  
SB_22235| Best HMM Match : CP2 (HMM E-Value=1.1)                       27   8.8  

>SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0)
          Length = 1596

 Score = 67.7 bits (158), Expect = 4e-12
 Identities = 25/56 (44%), Positives = 37/56 (66%)
 Frame = +1

Query: 112 LVDPQQSLREECSQKPDAQNMWAKYQECNDRVNSRSKTAETCEEELIDYVHVLDKC 279
           LVDP  ++RE C +KP+   +  +   C +RVNS+S T ETC +EL+D++H  D C
Sbjct: 372 LVDPMDAIRESCEEKPECSKLKLELSNCEERVNSKSSTTETCAQELLDFMHCRDHC 427


>SB_30340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 142 ECSQKPDAQNMWAKYQECNDRVNSRSKTAETCEEELI 252
           EC +KP    MW +Y+   D++ SR +      +E I
Sbjct: 36  ECCRKPLVYYMWYRYERFEDKMKSRERYENEGNQEKI 72


>SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)
          Length = 537

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -2

Query: 294 QVLGDAFVKNMDIVNEFFFTGFCSFRS-GVYTIIALLIFSPHV 169
           Q + ++FV+N +IVN+ FF       S   + ++++L+  PH+
Sbjct: 47  QHIDESFVENEEIVNDIFFAQQVIPNSCATHALLSVLLNCPHI 89


>SB_41501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 748

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = -2

Query: 291 VLGDAFVKNMDIVNEFFFTGFCSFRSGVYTIIALLIFSPHVLGIRLL 151
           +LG +FV  +  +N  +F   C  + GVYT+I  L +   +LG+ ++
Sbjct: 516 LLGVSFV--VPHINNLYFLTLCR-KYGVYTVIKWLFYVKLLLGLSMM 559


>SB_54999| Best HMM Match : DUF992 (HMM E-Value=1.4)
          Length = 204

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = +2

Query: 140 KSVPKSLMPKTCGLNIKSAMIV*TPDLKLQKPVKKNSLTMSMFLTNASP 286
           KSV KS  PK    NIK  M   TP +++       S  + M  T   P
Sbjct: 23  KSVKKSFTPKNVKQNIKEQMNSKTPKMQVASVSVSTSAALKMIDTFDRP 71


>SB_31047| Best HMM Match : CHORD (HMM E-Value=6.2)
          Length = 251

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = +1

Query: 166 QNMWAKYQECNDRVNSRSKTAETCEEELIDYVHVL 270
           +  W+  + C +R     +   +CE +L+ ++H L
Sbjct: 2   KRFWSFKKHCQERQQHGFRALRSCETQLLGFIHSL 36


>SB_22235| Best HMM Match : CP2 (HMM E-Value=1.1)
          Length = 284

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = +1

Query: 166 QNMWAKYQECNDRVNSRSKTAETCEEELIDYVHVL 270
           +  W+  + C +R     +   +CE +L+ ++H L
Sbjct: 2   KRFWSFKKHCQERQQHGFRALRSCETQLLGFIHSL 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,893,024
Number of Sequences: 59808
Number of extensions: 198183
Number of successful extensions: 392
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)